Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LVJ88_RS07970 Genome accession   NZ_CP091509
Coordinates   1737584..1739815 (-) Length   743 a.a.
NCBI ID   WP_244694138.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1732584..1744815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS07960 (LVJ88_07960) - 1732982..1735024 (-) 2043 WP_054598713.1 oligopeptide transporter, OPT family -
  LVJ88_RS07965 (LVJ88_07965) ilvD 1735446..1737308 (+) 1863 WP_085417645.1 dihydroxy-acid dehydratase -
  LVJ88_RS07970 (LVJ88_07970) comA 1737584..1739815 (-) 2232 WP_244694138.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LVJ88_RS07975 (LVJ88_07975) - 1739988..1740869 (-) 882 WP_085358107.1 cation diffusion facilitator family transporter -
  LVJ88_RS07980 (LVJ88_07980) - 1741135..1741836 (-) 702 WP_085355818.1 hypothetical protein -
  LVJ88_RS07985 (LVJ88_07985) ubiB 1742176..1743687 (+) 1512 WP_085417709.1 ubiquinone biosynthesis regulatory protein kinase UbiB -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81513.62 Da        Isoelectric Point: 10.2300

>NTDB_id=651826 LVJ88_RS07970 WP_244694138.1 1737584..1739815(-) (comA) [Neisseria dumasiana strain LMG 30012]
MPRFWLPLWVSGVVVSFALPAVPSWTVLAAVWLCLFAAAWRFRAAAWLLIAFSGALYGIWRTQSALEQQWPAVQTASVPL
TIEVADLPQRDDKRVRFTARASDGAGREYRLLLSDYGLRDWSAGSRWQVKARVRPPVGEVNLRGFNREAWALADGINGVG
SIGKERQPLPENRAGVLLRVREAVSLRWQQTDTGGRDFSDALGLMRALSIGEQSALSAQSWQAFRPLGLNHLVSISGLHV
GMVAVLVGWLMKQLLRVLPRVPKRPRVWMLAAGLAAALFYAGLAGFSVPTQRSVLMLCALAWAWWRGSGASVWAGWWQAL
AWVLLFDPLAVLGAGFWLSFGLVGALLWVSAGRLNERGWLLAVRGQWAVSLLSVAALGSMFASLPLISPLVNALAIPWFS
WMLVPLALLASLLPFGWLQWLAAAAGEYTMRVLVWVAEYAPEYAVAASPPYLLPLAVLAVLIVLLPRGTGWKPLAWLVLA
GFVLYRPPPVVEGRLKVTVWDAGQGLSVLMQTKNHHLLFDTGTEHIANAQILPALNAAGVRRLDALVLSHHDADHDGGFA
EIRRSKQPRRIWAGQPEFYQGAEFCRERQWQWDGAVFEFLRPSENPKTADDNEQSCVLRVLAGGQSLLVTGDLGKRGELA
LVEKYGEGLYSQVLVLGHHGSDTSSAGGFLNAVSPQYAVASSGYANAYKHPTTAVQNRVKAHGITLLRTDLSGALVFELG
AGEEVRAGRLKTIKPYWQRKPFE

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=651826 LVJ88_RS07970 WP_244694138.1 1737584..1739815(-) (comA) [Neisseria dumasiana strain LMG 30012]
ATGCCCCGTTTCTGGCTGCCGCTTTGGGTAAGCGGCGTTGTTGTTTCGTTTGCGCTGCCCGCCGTACCGTCTTGGACGGT
GCTGGCGGCGGTATGGCTGTGCCTGTTTGCAGCGGCGTGGCGGTTTCGGGCGGCGGCTTGGCTGCTGATCGCTTTTTCCG
GTGCGTTATACGGCATCTGGCGCACGCAGTCTGCTTTGGAACAACAATGGCCTGCGGTTCAGACGGCCTCTGTGCCGCTC
ACGATAGAAGTGGCGGATTTGCCGCAGCGCGACGACAAACGGGTGCGTTTTACGGCGCGGGCGAGTGATGGTGCGGGGCG
GGAATACCGTTTGCTGCTGTCGGATTACGGCCTGCGCGATTGGTCGGCCGGCAGCCGCTGGCAGGTTAAGGCAAGGGTTA
GGCCGCCGGTGGGTGAGGTTAATCTGCGCGGTTTCAACCGTGAGGCGTGGGCGTTGGCCGACGGCATCAACGGGGTGGGT
AGCATCGGCAAGGAAAGGCAGCCGTTGCCGGAAAACCGTGCCGGTGTGCTGTTGCGTGTGCGCGAAGCGGTGAGCCTGCG
TTGGCAGCAAACCGATACCGGCGGGCGGGATTTTTCAGACGCCCTCGGTTTGATGCGGGCCTTGAGCATAGGCGAGCAGT
CGGCTTTGAGCGCACAATCTTGGCAGGCATTCCGGCCTTTGGGCTTGAACCATTTGGTAAGTATTTCCGGCCTGCATGTA
GGTATGGTGGCGGTGCTGGTGGGGTGGTTGATGAAGCAGTTGCTGCGTGTGCTGCCGCGCGTGCCGAAACGGCCGCGGGT
GTGGATGTTGGCGGCGGGTTTGGCGGCGGCGTTGTTTTATGCGGGTTTGGCGGGGTTTTCGGTGCCGACGCAGCGCAGCG
TGTTGATGCTGTGTGCGCTGGCGTGGGCTTGGTGGCGCGGCAGCGGCGCGTCGGTATGGGCGGGTTGGTGGCAGGCGCTG
GCTTGGGTGCTGCTGTTTGACCCGTTGGCGGTTTTGGGGGCGGGGTTTTGGCTCTCGTTCGGCTTGGTGGGGGCTTTGCT
GTGGGTGTCGGCAGGCCGTCTGAACGAGCGCGGTTGGTTGTTGGCGGTGCGCGGGCAATGGGCGGTGTCGCTGTTGTCGG
TGGCGGCTTTGGGCAGCATGTTTGCTTCGCTGCCGCTCATCAGCCCGTTGGTGAATGCGTTGGCGATTCCGTGGTTTTCG
TGGATGCTGGTGCCGCTGGCTCTGCTGGCTTCGCTGCTGCCGTTTGGCTGGCTGCAATGGCTGGCGGCTGCGGCGGGCGA
ATACACTATGCGCGTGTTGGTGTGGGTGGCGGAATATGCGCCCGAATATGCGGTGGCGGCTTCGCCGCCTTATCTGCTGC
CGTTGGCGGTGCTGGCGGTATTGATAGTGTTGCTGCCGCGCGGCACGGGCTGGAAACCGCTTGCGTGGCTGGTGTTGGCG
GGGTTTGTGCTGTACCGCCCGCCGCCTGTTGTGGAAGGCCGTCTGAAAGTAACGGTTTGGGATGCGGGGCAGGGTTTGTC
GGTGTTGATGCAGACGAAAAACCATCACCTGTTGTTCGATACCGGCACGGAGCACATCGCCAACGCGCAGATTCTGCCTG
CGCTGAATGCCGCCGGTGTGCGCCGTTTGGACGCACTGGTGCTGTCGCATCACGATGCCGACCACGACGGCGGTTTTGCC
GAAATCCGCCGCTCGAAACAGCCGCGCCGAATCTGGGCGGGGCAGCCTGAGTTTTATCAGGGTGCGGAGTTTTGCAGGGA
GCGGCAATGGCAATGGGACGGCGCGGTGTTTGAGTTTTTGAGGCCGTCTGAAAACCCGAAAACAGCCGACGACAACGAGC
AAAGTTGCGTTCTGCGCGTGCTGGCGGGCGGGCAGTCGCTGCTGGTAACGGGCGATTTGGGCAAACGCGGCGAGCTGGCG
TTGGTGGAAAAATACGGCGAAGGCTTGTACAGCCAAGTGTTGGTGCTGGGGCATCACGGCAGCGACACTTCGTCGGCGGG
CGGTTTTCTGAACGCGGTTTCGCCGCAATACGCCGTGGCTTCGAGCGGTTATGCCAATGCTTACAAACACCCCACCACAG
CGGTGCAAAACCGCGTGAAAGCCCACGGCATTACGCTGTTGCGTACCGATTTGTCGGGCGCGCTGGTGTTTGAACTGGGC
GCGGGAGAAGAGGTGCGGGCAGGCCGTCTGAAAACAATTAAACCGTATTGGCAGAGAAAGCCGTTTGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-659)

Competence protein (Competence)

(208-464)

Domain of unknown function (DUF4131) (DUF4131)

(23-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

63.881

99.865

0.638