Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVJ88_RS06965 Genome accession   NZ_CP091509
Coordinates   1535574..1536953 (+) Length   459 a.a.
NCBI ID   WP_085418000.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1530574..1541953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS06935 (LVJ88_06935) - 1530768..1531676 (+) 909 WP_198941566.1 LysR family transcriptional regulator -
  LVJ88_RS06940 (LVJ88_06940) - 1531896..1532459 (+) 564 WP_054598810.1 YceI family protein -
  LVJ88_RS06945 (LVJ88_06945) - 1532507..1533262 (-) 756 Protein_1355 IS30 family transposase -
  LVJ88_RS06950 (LVJ88_06950) - 1533375..1533962 (-) 588 WP_085356456.1 hypothetical protein -
  LVJ88_RS06955 (LVJ88_06955) - 1533974..1534192 (-) 219 WP_085418002.1 sulfurtransferase TusA family protein -
  LVJ88_RS06960 (LVJ88_06960) - 1534386..1535195 (-) 810 WP_158087932.1 tetratricopeptide repeat protein -
  LVJ88_RS06965 (LVJ88_06965) radA 1535574..1536953 (+) 1380 WP_085418000.1 DNA repair protein RadA Machinery gene
  LVJ88_RS06970 (LVJ88_06970) - 1536950..1537468 (+) 519 WP_085417999.1 hypothetical protein -
  LVJ88_RS06975 (LVJ88_06975) - 1537552..1537827 (-) 276 WP_233127516.1 multidrug efflux SMR transporter -
  LVJ88_RS06980 (LVJ88_06980) - 1537924..1538223 (-) 300 WP_085417997.1 AzlD family protein -
  LVJ88_RS06985 (LVJ88_06985) - 1538220..1538930 (-) 711 WP_085417996.1 AzlC family ABC transporter permease -
  LVJ88_RS06990 (LVJ88_06990) trpE 1539095..1540570 (+) 1476 WP_244694130.1 anthranilate synthase component I -
  LVJ88_RS06995 (LVJ88_06995) bioC 1540865..1541644 (-) 780 WP_244694131.1 malonyl-ACP O-methyltransferase BioC -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49474.05 Da        Isoelectric Point: 7.1113

>NTDB_id=651823 LVJ88_RS06965 WP_085418000.1 1535574..1536953(+) (radA) [Neisseria dumasiana strain LMG 30012]
MAKAPKTVYQCSECGGTTPKWQGKCPHCGEWNTLQESLAAPEPKNVRFQSWAADTAQVQDLSKVTATEVPREPTGMGELD
RVLGGGLVSGAVILLGGDPGIGKSTLLLQTVAMMAKSRKVLYVSGEESAQQVALRAQRLGLQSEGVNLLAEIRMEAIQTA
LKQHEPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTEHGLKGVSNPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKINEPAADLAIILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAVVPKANLPRNPKEFPGLQIFGVSSLQEAVEVCRNSEE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=651823 LVJ88_RS06965 WP_085418000.1 1535574..1536953(+) (radA) [Neisseria dumasiana strain LMG 30012]
ATGGCAAAAGCACCGAAAACCGTTTACCAATGCAGCGAATGCGGCGGCACCACCCCCAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACCTTGCAGGAAAGCCTTGCCGCGCCCGAGCCGAAAAACGTGCGCTTCCAATCGTGGGCGGCAG
ATACGGCACAGGTGCAGGATCTTTCCAAAGTAACGGCCACCGAAGTGCCGCGCGAGCCCACCGGCATGGGCGAACTCGAC
CGCGTGTTGGGCGGCGGTTTGGTAAGCGGTGCAGTGATTTTGCTCGGCGGCGACCCCGGTATCGGCAAATCGACGCTGCT
TCTGCAAACCGTGGCGATGATGGCGAAAAGCCGCAAAGTGCTGTATGTATCGGGTGAGGAATCCGCCCAACAAGTCGCTT
TGCGCGCGCAACGCTTGGGCTTGCAAAGCGAAGGCGTGAACCTGCTGGCGGAAATCCGCATGGAAGCCATTCAGACGGCC
TTAAAACAGCACGAACCCGCCGTGGTGGTGATCGATTCGATTCAAACCATGTATTCCGACCAAATCACTTCCGCGCCCGG
CTCGGTATCGCAAGTACGCGAATGTGCCGCGCAGCTTACCCGCATGGCCAAGCAGATGGGCATTGCCATGATTTTGGTCG
GCCACGTTACCAAAGACGGTGCCATCGCCGGCCCGCGCGTGCTCGAACACATGGTCGATACTGTGCTTTATTTCGAGGGC
GACCAGCATTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCCAACGAGCTGGGCGTTTTCGCCAT
GACCGAACACGGCTTGAAAGGCGTGTCCAACCCTTCCGCCATCTTCCTTGCCAGCTACCGCGACGACGTACCCGGCTCAT
GCGTATTGGTCACTCAAGAAGGCAGCCGCCCGCTGTTGGTGGAAATTCAGGCATTAGTCGACGACGCGCACGGCTTTACG
CCCAAACGCCTTACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGTTGGCCGTGTTAAACCGCCATGCCGGCATCGC
CTGCTTCGACCAAGACGTGTTCCTGAACGCCGTGGGCGGCGTAAAAATCAACGAACCCGCCGCCGACCTCGCCATCATTC
TTGCCATGCTCTCCAGCTTCCGCAACCGCCCGCTACCCGAAAAAATGGTGGCCTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTGGCACGCGGGCAGGAACGCTTGAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCGTCGTGCCTAAAGC
CAATCTGCCGCGCAACCCGAAAGAATTCCCCGGCTTACAGATTTTCGGCGTGAGCAGTTTGCAGGAAGCGGTGGAGGTGT
GCAGGAATAGTGAAGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

AAA domain (AAA_25)

(79-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.328

99.564

0.501
  radA Streptococcus mitis NCTC 12261

47.577

98.911

0.471
  radA Streptococcus pneumoniae Rx1

47.357

98.911

0.468
  radA Streptococcus pneumoniae D39

47.357

98.911

0.468
  radA Streptococcus pneumoniae R6

47.357

98.911

0.468
  radA Streptococcus pneumoniae TIGR4

47.357

98.911

0.468
  radA Streptococcus mitis SK321

47.137

98.911

0.466