Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LVJ88_RS05870 Genome accession   NZ_CP091509
Coordinates   1293417..1293866 (+) Length   149 a.a.
NCBI ID   WP_085356160.1    Uniprot ID   A0AB38DR66
Organism   Neisseria dumasiana strain LMG 30012     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1288417..1298866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS05845 (LVJ88_05845) ppx 1288891..1290390 (-) 1500 WP_085418413.1 exopolyphosphatase -
  LVJ88_RS05850 (LVJ88_05850) - 1290657..1291205 (+) 549 WP_054600110.1 YqgE/AlgH family protein -
  LVJ88_RS05855 (LVJ88_05855) ruvX 1291198..1291668 (+) 471 WP_085418414.1 Holliday junction resolvase RuvX -
  LVJ88_RS05860 (LVJ88_05860) - 1291783..1292193 (+) 411 WP_054600108.1 YidB family protein -
  LVJ88_RS05865 (LVJ88_05865) - 1292631..1293344 (+) 714 WP_085418415.1 phosphoglycolate phosphatase -
  LVJ88_RS05870 (LVJ88_05870) recX 1293417..1293866 (+) 450 WP_085356160.1 recombination regulator RecX Regulator
  LVJ88_RS05875 (LVJ88_05875) serC 1293963..1295069 (-) 1107 WP_085359108.1 phosphoserine transaminase -
  LVJ88_RS05880 (LVJ88_05880) - 1295380..1296150 (-) 771 WP_085418429.1 TatD family hydrolase -
  LVJ88_RS05885 (LVJ88_05885) - 1296265..1296810 (+) 546 WP_054600104.1 RDD family protein -
  LVJ88_RS05890 (LVJ88_05890) - 1297139..1298407 (+) 1269 WP_082403036.1 mechanosensitive ion channel domain-containing protein -
  LVJ88_RS05895 (LVJ88_05895) nudB 1298415..1298861 (+) 447 WP_085418416.1 dihydroneopterin triphosphate diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17538.91 Da        Isoelectric Point: 8.0563

>NTDB_id=651820 LVJ88_RS05870 WP_085356160.1 1293417..1293866(+) (recX) [Neisseria dumasiana strain LMG 30012]
MKPQKSLRARALDILARQEISRAELKRKLAPYAEHEDELDELLDEFADRHWQSDQRFAEAYIHSKSRQHGTLRLKQALQA
KGVDEETVREFLPSRESELDTAMAVLKKKFKQPAADMKEKQKQIRFLAYRGFDMDTIQTALKNCRYDDE

Nucleotide


Download         Length: 450 bp        

>NTDB_id=651820 LVJ88_RS05870 WP_085356160.1 1293417..1293866(+) (recX) [Neisseria dumasiana strain LMG 30012]
ATGAAACCGCAAAAATCCCTACGCGCCCGAGCTTTAGATATACTTGCGCGACAAGAAATCAGTCGCGCCGAACTCAAGCG
CAAGCTTGCGCCGTATGCCGAGCATGAAGACGAGTTGGACGAGCTTTTGGACGAATTTGCCGATCGCCATTGGCAATCAG
ACCAACGCTTTGCAGAAGCCTATATCCACAGCAAAAGCAGACAACACGGTACACTGCGTTTGAAACAAGCATTGCAAGCC
AAAGGCGTGGATGAAGAAACCGTGCGTGAATTTCTGCCTTCGCGCGAAAGCGAGTTGGATACCGCAATGGCTGTGTTAAA
GAAGAAATTCAAACAACCTGCCGCAGATATGAAAGAAAAACAAAAGCAGATCCGTTTCCTCGCTTATCGGGGTTTTGATA
TGGATACGATTCAGACGGCCTTGAAAAACTGCCGTTATGACGATGAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

70.833

96.644

0.685