Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   LVJ88_RS04625 Genome accession   NZ_CP091509
Coordinates   1018313..1020073 (+) Length   586 a.a.
NCBI ID   WP_085417764.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1013313..1025073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS04600 (LVJ88_04600) mltG 1013688..1014683 (+) 996 WP_085358185.1 endolytic transglycosylase MltG -
  LVJ88_RS04605 (LVJ88_04605) tmk 1014847..1015467 (+) 621 WP_054598690.1 dTMP kinase -
  LVJ88_RS04610 (LVJ88_04610) - 1015579..1016835 (+) 1257 WP_085417762.1 DUF2254 family protein -
  LVJ88_RS04615 (LVJ88_04615) - 1017003..1017611 (+) 609 WP_085417763.1 DUF4230 domain-containing protein -
  LVJ88_RS04620 (LVJ88_04620) tpx 1017648..1018142 (+) 495 WP_054598592.1 thiol peroxidase -
  LVJ88_RS04625 (LVJ88_04625) recD 1018313..1020073 (+) 1761 WP_085417764.1 exodeoxyribonuclease V subunit alpha Machinery gene
  LVJ88_RS04630 (LVJ88_04630) - 1020317..1021501 (+) 1185 WP_085417765.1 acetylornithine/succinyldiaminopimelate transaminase -
  LVJ88_RS04635 (LVJ88_04635) rimP 1021761..1022192 (+) 432 WP_054598594.1 ribosome maturation factor RimP -
  LVJ88_RS04640 (LVJ88_04640) nusA 1022220..1023716 (+) 1497 WP_085356883.1 transcription termination factor NusA -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 63889.90 Da        Isoelectric Point: 6.4598

>NTDB_id=651817 LVJ88_RS04625 WP_085417764.1 1018313..1020073(+) (recD) [Neisseria dumasiana strain LMG 30012]
MPSLPDNDLNHAAADAAVAMLQRHAPEDAALAEPYVRRLFAALQEGHAFIWLEDDEVQMVRQAADVVGGSGDTPLILAGK
KLFLGRMWQFERDLAAEILRLADAAVPPVDWLQAGQNLAEWFAQKGSEGQRDAAALALLKPFMLISGGPGTGKTTTVAKL
LGLLCSHAGKLPRIALAAPTGKAAAHMSRALHRAVQTFALPENVRNHLLQLEGQTVHRLLKLRPPQMQPLFHREQPLPLD
ILVIDEASMLDLALLLQLLQAVPSGCRVVLLGDENQLPSVGAGAVLSELAQPTVLAADTARELETMLPQHGFAVSDGPPP
LAENIARLQISHRFGSNSGIGCLARAVASDDAAEAWAQFGRFPQELEVRSGSGKQQAEILYQRHARYWQAVDEGDVAAAF
QYQADAVVLAARRDDAEAFNGEYRRCLQRHGRARADAPWFAGQVIMVSSNDYALDVFNGDIALILPDQEQKDVLAAYFPA
AEGFRKTALSRLPAYETAFAITVHKSQGSEYREVWLLPPALAETGGAQHGLNKALLYTAITRARERFVFWGSQAVFQTAC
MLNERRRSALREMIHKHRSSAAVNTE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=651817 LVJ88_RS04625 WP_085417764.1 1018313..1020073(+) (recD) [Neisseria dumasiana strain LMG 30012]
ATGCCTTCTCTGCCTGATAACGATTTGAACCATGCCGCCGCCGATGCGGCGGTTGCCATGCTGCAACGCCATGCTCCTGA
AGATGCGGCATTGGCCGAGCCTTATGTGCGCCGCCTGTTTGCCGCGTTGCAGGAAGGGCATGCTTTTATTTGGCTGGAAG
ACGACGAAGTGCAGATGGTTCGGCAGGCCGCAGATGTTGTCGGCGGCAGCGGTGATACGCCGTTGATTTTGGCAGGTAAA
AAGCTTTTTTTAGGGCGGATGTGGCAATTTGAACGGGATTTGGCGGCAGAAATACTCCGCCTCGCCGATGCGGCCGTGCC
GCCCGTAGATTGGTTGCAGGCGGGTCAGAATCTGGCGGAATGGTTCGCACAAAAAGGAAGCGAAGGCCAGCGTGATGCGG
CGGCGTTGGCTTTGTTGAAACCGTTTATGCTGATCAGCGGCGGGCCGGGTACGGGCAAAACCACAACGGTGGCGAAACTG
CTCGGTTTGTTGTGCAGCCATGCGGGCAAACTGCCGCGCATCGCCTTGGCCGCGCCTACGGGCAAAGCCGCCGCGCACAT
GTCGCGCGCTTTGCACCGTGCCGTGCAAACATTTGCTCTGCCCGAAAATGTGCGCAATCATCTGCTGCAACTGGAAGGCC
AAACCGTACACCGCCTGTTGAAGCTGCGTCCGCCGCAAATGCAGCCGCTGTTTCATCGCGAACAGCCGTTGCCGCTGGAT
ATTTTAGTGATAGACGAAGCTTCTATGCTTGACCTTGCCTTGCTGCTGCAACTTCTGCAAGCCGTGCCTTCGGGTTGCAG
GGTGGTGCTTTTGGGTGATGAGAACCAACTGCCTTCGGTAGGGGCGGGAGCCGTATTGTCGGAGCTGGCGCAGCCGACCG
TATTGGCCGCCGATACGGCCAGAGAACTCGAAACCATGTTGCCGCAACACGGTTTTGCCGTTTCAGACGGCCCGCCGCCC
TTGGCAGAAAACATAGCGCGTTTGCAGATTAGCCACCGTTTCGGCAGCAACAGCGGCATAGGGTGTTTGGCGCGTGCGGT
GGCATCGGACGATGCAGCCGAAGCATGGGCGCAGTTCGGCCGCTTTCCTCAAGAGTTGGAGGTGCGAAGCGGCAGCGGAA
AACAGCAGGCAGAAATACTGTATCAACGTCATGCACGATATTGGCAGGCGGTTGACGAAGGCGACGTGGCTGCCGCATTC
CAATATCAGGCCGATGCAGTTGTGCTGGCTGCCAGACGCGACGATGCCGAAGCATTCAACGGAGAATACCGCCGCTGTCT
GCAACGCCACGGCCGTGCCAGAGCCGATGCACCGTGGTTTGCAGGGCAAGTGATTATGGTTTCGAGCAACGATTATGCCT
TAGATGTGTTTAACGGCGATATCGCACTGATTCTGCCCGATCAAGAACAGAAAGACGTTTTGGCAGCTTATTTTCCGGCG
GCAGAAGGTTTCCGCAAAACAGCCCTCAGCCGCCTGCCTGCATACGAAACCGCCTTTGCCATAACCGTACATAAAAGCCA
AGGTTCGGAATACCGCGAGGTATGGCTGTTGCCGCCCGCGCTTGCGGAAACAGGCGGAGCGCAGCACGGTTTGAACAAAG
CCTTGCTCTACACCGCCATTACCCGTGCCCGCGAGCGTTTTGTGTTTTGGGGCAGCCAAGCTGTTTTTCAGACGGCCTGT
ATGCTTAACGAACGCCGCCGCAGCGCCTTAAGGGAAATGATACATAAACACCGCTCAAGCGCGGCCGTTAATACCGAATA
G

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(127-292)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.363

95.904

0.56