Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG797_RS09210 Genome accession   NZ_CP108033
Coordinates   2163166..2163960 (+) Length   264 a.a.
NCBI ID   WP_024489034.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00304     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2158166..2168960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG797_RS09195 (OG797_09200) - 2158414..2158950 (+) 537 WP_073737716.1 TerD family protein -
  OG797_RS09200 (OG797_09205) - 2159054..2161960 (-) 2907 WP_073737786.1 vitamin B12-dependent ribonucleotide reductase -
  OG797_RS09205 (OG797_09210) nrdR 2162120..2162632 (-) 513 WP_073737717.1 transcriptional regulator NrdR -
  OG797_RS09210 (OG797_09215) dinR/lexA 2163166..2163960 (+) 795 WP_024489034.1 transcriptional repressor LexA Regulator
  OG797_RS09215 (OG797_09220) - 2164059..2166029 (-) 1971 WP_073737718.1 ATP-dependent DNA helicase -
  OG797_RS09220 (OG797_09225) - 2166080..2168059 (-) 1980 WP_328865210.1 IucA/IucC family siderophore biosynthesis protein -
  OG797_RS09225 (OG797_09230) - 2168120..2168908 (-) 789 WP_328865211.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28651.39 Da        Isoelectric Point: 7.4242

>NTDB_id=651817 OG797_RS09210 WP_024489034.1 2163166..2163960(+) (dinR/lexA) [Streptomyces sp. NBC_00304]
MTTTADSAIITAQDRSQSRREPVHAMNDSATNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=651817 OG797_RS09210 WP_024489034.1 2163166..2163960(+) (dinR/lexA) [Streptomyces sp. NBC_00304]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACGTGAGCCGGTGCATGCCATGAA
TGACTCAGCCACGAACACGGAGGGGCCCGAGCCCGCGCGCCCAGCGCGCTCGCTTCCCGGGCGACCTCCTGGAATCCGGG
CGGACAGCTCAGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGACTCCGTGCAGCGGCGGGGATATCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGTACGTCCTCCGTCGCGCATCAGCTCATGGCTCTGGAACG
CAAGGGGTTCCTGCGCCGTGACCCCCACCGACCCCGGGCGTACGAGGTTCGCGGATCGGACCAGCCCAGCACGCAGCCCA
CGGACACCACCGGGAAGCCCGCGGCTTCGTACGTTCCGTTGGTCGGCCGGATCGCGGCCGGTGGTCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTTCCGCTTCCCCGCCAGCTGGTCGGTGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAAGCGGCGATCTGCGACGGGGACTGGGTCACGGTCCGGCGCCAGCCCGTGGCGGAGAACGGCGACATCG
TGGCGGCGATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGTCATGTCTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371