Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   LVJ88_RS01325 Genome accession   NZ_CP091509
Coordinates   299623..302847 (-) Length   1074 a.a.
NCBI ID   WP_085418964.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 294623..307847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS01305 (LVJ88_01305) - 295492..295689 (-) 198 WP_054599455.1 hypothetical protein -
  LVJ88_RS01310 (LVJ88_01310) - 295667..295900 (-) 234 WP_054599456.1 RNA-binding S4 domain-containing protein -
  LVJ88_RS01315 (LVJ88_01315) - 296190..297719 (+) 1530 WP_085356937.1 catalase -
  LVJ88_RS01320 (LVJ88_01320) - 297857..299248 (-) 1392 WP_244694177.1 DEAD/DEAH box helicase -
  LVJ88_RS01325 (LVJ88_01325) recC 299623..302847 (-) 3225 WP_085418964.1 exodeoxyribonuclease V subunit gamma Machinery gene
  LVJ88_RS01330 (LVJ88_01330) ppk2 303084..304025 (-) 942 WP_085355947.1 polyphosphate kinase 2 -
  LVJ88_RS01335 (LVJ88_01335) - 304231..306027 (+) 1797 WP_085418965.1 bifunctional anthranilate synthase component I family protein/class IV aminotransferase -
  LVJ88_RS01340 (LVJ88_01340) - 306432..307652 (-) 1221 WP_054599464.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 121981.00 Da        Isoelectric Point: 5.9687

>NTDB_id=651808 LVJ88_RS01325 WP_085418964.1 299623..302847(-) (recC) [Neisseria dumasiana strain LMG 30012]
MLYLYQSNRLEDLAALFAQVHRLQPPENPFEPEEIVVQSQGMRRYLNTYLARETGIAANLNFSLPAGLAWQLMRRFIPGI
PALSPFFPEVMRWRLLDLFQSSGFQTAAEYLPVHEALHSYLADSPTAAYQLAGQLADIFDQYLVYRPQWIDAWQQGKTVG
LGGDEAWQAVLWRYLDDGSQHTPHRVGLWRQLLDSLDPQHLPRRYCVFGIATMAPMYLQLLQALAEHCDVHIFALNPSSG
YWGNVIEAAQILQQEDDADLSLSGHPLLASLGKQGRDFFDALTDIPKHEISVFDEEPFQTAPPTLLRRLQYDIQTLSMPS
ENPNGLPQPDLNDGSIQAVSAHSPLRELHILKDKLLQVLDQHPDWQPHDIAVLTPDIEPYSPFIEAVFGQQQAGSRALPY
SVSDVKISRRQPLFQALAQALELLESRFEVNLLLPLLENDLVLQRFELTRDDLPLLHDTIAALNVHWGTDEHMRGGTNNL
FTWQQGLERLALGWMLPESRHPLWQRISAWHANPNHTAVLSRFSALIRTLTATARLWRQPASVPEWTERIRNLTAALTAT
DTDGQYAWQRLTQALARWQEEAELAGFSGTLPRQTVIRHIGRFLDSESQAGFLRGGITFCSMVPMRSLPFKMICLLGLND
GDFPRNTKAAAFDLIARHPQKGDRARRDDDRYLFLEAVMSARHILYLSYIGRDIRTDQPLAPSALLGELIDTLAAMTGRS
SQELHKHWIKQHPLQPFSHRYFTPEALSDGLGSTRSDYAEALNRPPETPLPFFSTPLQEAEPAHTVAHHEFIRFWKNPVR
NWLHNTLHWQKPYRDQAWDAAEPFEPQQSARITAEYTAARRHNEDFGRLESRLQAESLLPAGELGALWQNRFQTAAKSLD
HTLVTSPKLPPAPYTLTVGAHTLEGSLNHLYRHGQIYFPGQAFKAPEQLAVLLEHLIFCAVRPSETEQYQTHILLPEQPQ
TLIEIPQQKAAEALQQWLEYYQIGQSRPLPFFPRVNYKAAQEWNKTNDQSKALSEAYKLYHGGSHTAGQKSYPEVALVFG
SDEEDPTASTLFWNITADLLAPLIELTAPPTEND

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=651808 LVJ88_RS01325 WP_085418964.1 299623..302847(-) (recC) [Neisseria dumasiana strain LMG 30012]
ATGCTTTACCTCTACCAGTCCAACCGCCTCGAAGACTTAGCCGCCCTGTTTGCTCAGGTACACCGCCTGCAACCGCCCGA
AAACCCTTTCGAGCCGGAAGAAATCGTGGTGCAGAGCCAAGGCATGCGGCGGTATCTCAACACCTATCTGGCGCGCGAAA
CCGGCATTGCGGCCAACCTGAATTTCAGCCTGCCCGCCGGCTTGGCATGGCAGCTGATGCGGCGGTTTATTCCGGGCATT
CCCGCACTCAGCCCGTTTTTTCCCGAAGTGATGCGTTGGCGGCTGCTCGACCTGTTTCAAAGCAGCGGTTTTCAGACGGC
CGCCGAATACCTTCCCGTGCATGAAGCCCTGCACAGCTATCTTGCCGACAGCCCTACCGCAGCCTACCAGCTTGCCGGAC
AACTGGCCGATATTTTCGACCAATACCTCGTGTACCGCCCGCAATGGATAGACGCTTGGCAGCAGGGCAAAACCGTCGGC
TTGGGCGGCGACGAAGCATGGCAGGCCGTTTTGTGGCGTTATCTCGACGACGGCTCGCAACACACCCCGCACCGCGTCGG
CTTGTGGCGGCAGCTGCTCGATTCGCTCGACCCGCAGCACCTGCCCCGCCGCTACTGTGTTTTCGGCATCGCCACCATGG
CACCGATGTATCTGCAACTGTTGCAGGCGCTGGCCGAACATTGCGACGTGCACATTTTCGCGCTCAACCCCAGCAGCGGC
TATTGGGGCAACGTAATTGAAGCGGCGCAAATCCTCCAACAGGAAGACGATGCCGATTTAAGCCTTTCCGGCCACCCGCT
GCTCGCTTCGCTGGGCAAACAGGGGCGCGACTTTTTCGACGCGCTCACCGACATACCCAAACACGAAATTTCCGTATTCG
ACGAAGAACCTTTTCAGACGGCCCCGCCCACGCTGCTGCGGCGTTTGCAATACGACATCCAAACCCTGTCGATGCCGTCT
GAAAACCCAAACGGCCTGCCCCAACCCGACTTAAACGACGGATCGATACAGGCCGTATCCGCGCACAGCCCCCTGCGCGA
ACTGCACATTCTCAAAGACAAACTGCTGCAAGTGCTCGATCAGCATCCCGATTGGCAGCCGCACGACATCGCCGTACTCA
CGCCCGATATCGAACCCTACAGCCCCTTTATCGAAGCCGTGTTCGGGCAACAGCAGGCAGGCAGCCGCGCCCTGCCCTAT
TCGGTATCCGACGTTAAAATCAGCCGCCGCCAACCCCTGTTTCAAGCACTCGCCCAAGCCCTGGAGCTGCTCGAAAGCCG
TTTTGAAGTCAACCTGCTGCTGCCGCTGCTCGAAAACGACCTTGTGCTACAACGCTTCGAGCTGACCCGCGACGACCTGC
CGCTGCTGCACGACACCATCGCCGCACTCAACGTACACTGGGGCACCGACGAACACATGCGCGGCGGCACCAACAATCTG
TTTACTTGGCAACAAGGGCTGGAACGCCTCGCCCTCGGCTGGATGCTGCCCGAAAGCCGCCACCCGCTGTGGCAGCGCAT
CAGCGCATGGCACGCCAACCCCAACCACACCGCCGTACTCAGCCGCTTCAGCGCACTTATCCGCACCCTCACCGCAACCG
CCCGCCTGTGGCGGCAACCCGCCTCCGTGCCGGAATGGACGGAACGCATCCGCAACCTTACTGCCGCCCTGACCGCCACC
GATACCGACGGCCAATACGCTTGGCAGCGACTTACCCAAGCCCTCGCCCGCTGGCAGGAAGAAGCCGAACTGGCAGGCTT
TAGCGGCACCTTGCCGCGCCAAACCGTTATCCGTCACATCGGCCGCTTTCTCGACAGCGAAAGCCAAGCCGGATTTCTAC
GCGGCGGCATCACCTTTTGCAGCATGGTGCCGATGCGCAGCCTGCCCTTCAAAATGATCTGCCTGCTCGGCCTCAACGAC
GGCGACTTCCCCCGCAACACCAAAGCCGCCGCCTTCGACCTCATCGCCCGCCACCCGCAAAAAGGCGACCGCGCCCGCCG
CGACGACGACCGCTACCTGTTTCTCGAAGCCGTGATGAGCGCGCGCCATATCCTTTACCTATCCTATATCGGCCGCGACA
TCCGCACCGACCAGCCCCTTGCCCCCTCCGCCCTGCTCGGCGAACTCATCGACACCCTCGCCGCCATGACCGGCCGCTCT
TCACAAGAGCTGCACAAACATTGGATAAAACAGCACCCGCTGCAACCCTTCTCGCACCGTTATTTCACCCCCGAAGCCCT
TTCAGACGGCCTCGGCAGCACCCGCAGCGATTACGCCGAAGCCCTCAACCGCCCGCCCGAAACACCCTTGCCTTTCTTCA
GTACGCCGCTGCAAGAAGCCGAACCCGCCCACACCGTTGCCCACCACGAATTTATCCGCTTTTGGAAAAACCCCGTCCGC
AACTGGCTGCACAACACCCTGCATTGGCAGAAACCCTACCGCGACCAAGCATGGGATGCCGCCGAACCTTTCGAGCCGCA
ACAATCCGCACGCATCACCGCCGAATACACCGCCGCCCGCCGCCATAACGAAGACTTCGGCCGCCTCGAAAGCCGCCTGC
AAGCCGAAAGCCTGCTGCCCGCAGGCGAATTGGGCGCACTGTGGCAAAACCGTTTCCAAACCGCCGCCAAATCGCTCGAC
CACACCTTAGTGACCAGCCCCAAACTGCCGCCCGCGCCCTACACCCTTACCGTCGGCGCGCACACCCTCGAAGGCAGCCT
CAACCATCTTTACCGCCACGGGCAGATTTACTTCCCCGGTCAAGCATTCAAAGCGCCCGAACAGCTCGCCGTTTTACTCG
AACATTTGATTTTCTGCGCCGTGAGGCCGTCTGAAACCGAACAGTACCAAACCCATATCCTGCTGCCCGAACAACCGCAA
ACCCTCATCGAGATTCCGCAACAAAAAGCAGCCGAAGCCCTGCAACAATGGCTGGAGTATTACCAAATAGGCCAAAGCCG
CCCGCTGCCGTTCTTCCCGCGCGTGAATTACAAAGCTGCCCAAGAATGGAATAAAACCAACGACCAAAGTAAAGCCTTAA
GCGAAGCCTATAAGCTTTACCACGGCGGCTCGCACACGGCCGGCCAAAAAAGCTATCCCGAAGTCGCGCTGGTGTTCGGC
AGCGATGAAGAAGACCCCACCGCTTCCACCCTCTTTTGGAACATCACCGCAGACCTGCTCGCCCCTTTAATCGAACTCAC
CGCACCGCCGACGGAAAACGATTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-314)

RecC C-terminal domain (RecC_C)

(784-1002)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

61.69

99.162

0.612