Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA05_RS27050 Genome accession   NZ_CP108032
Coordinates   6052165..6052950 (-) Length   261 a.a.
NCBI ID   WP_313943692.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00306     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6047165..6057950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS27035 (OHA05_27045) - 6047343..6048080 (+) 738 WP_328861923.1 GNAT family N-acetyltransferase -
  OHA05_RS27040 (OHA05_27050) - 6048254..6050047 (+) 1794 WP_313948835.1 IucA/IucC family protein -
  OHA05_RS27045 (OHA05_27055) - 6050091..6052058 (+) 1968 WP_328861924.1 ATP-dependent DNA helicase -
  OHA05_RS27050 (OHA05_27060) dinR/lexA 6052165..6052950 (-) 786 WP_313943692.1 transcriptional repressor LexA Regulator
  OHA05_RS27055 (OHA05_27065) nrdR 6053528..6054040 (+) 513 WP_313943691.1 transcriptional regulator NrdR -
  OHA05_RS27060 (OHA05_27070) - 6054206..6057088 (+) 2883 WP_313943690.1 vitamin B12-dependent ribonucleotide reductase -
  OHA05_RS27065 (OHA05_27075) - 6057199..6057903 (-) 705 WP_328861925.1 RraA family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28284.02 Da        Isoelectric Point: 8.0891

>NTDB_id=651791 OHA05_RS27050 WP_313943692.1 6052165..6052950(-) (dinR/lexA) [Streptomyces sp. NBC_00306]
MTTTADSATITAQDRSQNRFEPVHAMNDAATTPEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTSGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRENGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=651791 OHA05_RS27050 WP_313943692.1 6052165..6052950(-) (dinR/lexA) [Streptomyces sp. NBC_00306]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAACCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGACCCCCGAGGGTCCCAAGCCGACGCGTTCGCTGCCCGGCCGGCCCCCAGGGATCAGGGCGGACAGCT
CCGGGCTCACGGATCGGCAGCGGCGTGTCATCGAGGTGATCCGTGACTCCGTCCAGCGACGGGGTTACCCGCCGTCGATG
CGCGAGATCGGACAGGCCGTGGGCCTGTCCAGCACCTCTTCGGTCGCTCATCAGCTGATGGCGCTCGAGCGCAAGGGCTT
CCTGCGCCGGGACCCTCATCGGCCCAGGGCCTACGAGGTGCGCGGCTCCGACCAGCCCAGCACCCAGCCGACGGACACCA
GCGGCAAGCCCGCCGCATCGTACGTCCCGCTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTGGCCGAGGAGTCGGTC
GAGGACGTCTTCCCGCTCCCCCGGCAGCTGGTCGGCGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGAT
CGAGGCCGCCATCTGTGACGGCGACTGGGTGACGGTGCGGCGCCAGCCCGTCGCGGAGAACGGTGACATCGTGGCAGCCA
TGCTCGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGGGAGAACGGCCACGTCTGGCTGCTCCCGCACAATGCGGCGTAC
CAGCCGATCCCCGGCGACGAAGCGACCATCCTCGGCAAGGTGGTGGCTGTGCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(54-117)

Peptidase S24-like (Peptidase_S24)

(143-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.755

81.226

0.372