Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   LVJ83_RS05955 Genome accession   NZ_CP091508
Coordinates   1284919..1288503 (-) Length   1194 a.a.
NCBI ID   WP_244787248.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1279919..1293503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS05925 (LVJ83_05925) - 1280618..1281301 (+) 684 WP_244787236.1 Sir2 family NAD-dependent protein deacetylase -
  LVJ83_RS05930 (LVJ83_05930) - 1281534..1281695 (-) 162 WP_244787238.1 hypothetical protein -
  LVJ83_RS05935 (LVJ83_05935) ubiG 1281897..1282619 (-) 723 WP_244787240.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  LVJ83_RS05940 (LVJ83_05940) - 1282789..1284426 (-) 1638 WP_244787242.1 glycosyltransferase family 39 protein -
  LVJ83_RS05945 (LVJ83_05945) - 1284420..1284611 (-) 192 WP_244787244.1 hypothetical protein -
  LVJ83_RS05950 (LVJ83_05950) - 1284734..1284898 (-) 165 WP_244787246.1 hypothetical protein -
  LVJ83_RS05955 (LVJ83_05955) recB 1284919..1288503 (-) 3585 WP_244787248.1 exodeoxyribonuclease V subunit beta Machinery gene
  LVJ83_RS05960 (LVJ83_05960) - 1288875..1289435 (-) 561 WP_244787250.1 cysteine hydrolase family protein -
  LVJ83_RS05965 (LVJ83_05965) - 1289473..1289739 (-) 267 WP_244787252.1 hypothetical protein -
  LVJ83_RS05970 (LVJ83_05970) - 1289878..1291308 (-) 1431 WP_244787254.1 aminobutyraldehyde dehydrogenase -
  LVJ83_RS05975 (LVJ83_05975) - 1291411..1292796 (-) 1386 WP_244787256.1 putrescine aminotransferase -

Sequence

Protein


Download         Length: 1194 a.a.        Molecular weight: 133666.81 Da        Isoelectric Point: 5.9577

>NTDB_id=651789 LVJ83_RS05955 WP_244787248.1 1284919..1288503(-) (recB) [Uruburuella testudinis strain CCUG 63373m]
MTPATPFDPLEVPIAGTNLIEASAGTGKTWGIAALFTRMILLEHLPVENILVVTFTKAATAELKTRLRKRLDEALQALED
GSCAGITDAEGLQPYCADEFISALLTRALAQESHERLTVRLKAAIGQFDNAAIYTIHGFCQRLLRDYAFLCQAPFDTELA
EHSRTRLLTPAQDFWRTQVAADNHQARLAFQYKYTPERMLAEIQPFLNRPYLSFRRPEADLAQAEHKVQQTWQRIVPILP
ELAQTFWQVHPQLNGNNYRKTTFEPLFARLQAAADNGCLPKPEEKLPMLAADTLQSKTKKTARPDTAAFARLQVLADLGR
DLAAQSQVETEALIALPLDMLAYINHALAEQKKSQRDRSFDDLLIDTHQALTCNPHRAELAAAAAANWRVALIDEFQDTD
PLQYEIFNRIFTAHGNPLFLVGDPKQAIYSFRGADIYAYLQAARDADHRYTLATNRRSHRKLIKSIGALFQQKQHPFVLP
HIDYTDVDAARAHSNLTPPRSAVQVRWIDDNQQIITKEILRSRAAEYCADEIAAVLNQAAQGRLNLNGAPLQSGDIAVLV
RTHNEGGLISRALKARNVQSVLLQRESVFATAEAAAIAALIGFWLQPQRTEPLRFVLGSVLFRQTADELYALNQNEAALL
DWITSAETAAAQWQRHGFYAAMQQFTARHGIETRLLAADDERSLTNYHQILEKLAEEDEQSHSPSSLHQWLLAQIQAAGQ
GQRSDSHLLRLESDEALVKIVTMHASKGLQYPLVFCPFVWDAPDNKPAAWQILHRSNGSELLADTQLDEADQIQLADEEA
SERLRLLYVALTRAEEQLVIYAAHCNHTAVNTFAYLLEGGRHSNRSDTQAAYLAEKKINDAAGEKAMLYNNWQRFIDQAP
ADTEFAFVETAPEPATGPAARLSDGHYQAVAFPPRPFDFIRHTSFTGLSRHTQTRDHERDELQPAIDPAEAAAAENPPEH
TTTGSPGDIHHFPRGAQAGICLHELLENFDFNTAADSRSEAVCTTLARYGFEAEWLNAVTAMLNHTRLTPLTGSHALADQ
PAARRLPEMAFTLHMHDFKLSRLREWFARSSLPPECAAAAQWLDFADVEGYLNGFIDMVYQDSDGQVCIIDYKSNHLGMG
SADYTPQAMNEAMAEHHYYLQALIYAIAVARYFKLRNRALPVIAVRYLFLRGLDGRGNGVWAWNIDTADLAEWL

Nucleotide


Download         Length: 3585 bp        

>NTDB_id=651789 LVJ83_RS05955 WP_244787248.1 1284919..1288503(-) (recB) [Uruburuella testudinis strain CCUG 63373m]
ATGACCCCAGCCACCCCGTTCGACCCGCTTGAGGTGCCCATTGCCGGCACCAACCTTATCGAAGCTTCAGCCGGCACCGG
CAAAACTTGGGGCATTGCGGCCTTGTTTACCCGCATGATTCTGCTGGAACACCTGCCGGTAGAAAACATATTGGTGGTTA
CCTTCACCAAAGCAGCCACCGCCGAATTGAAAACCCGCTTGCGCAAACGCTTGGATGAAGCCCTGCAAGCGCTGGAAGAC
GGCAGCTGCGCCGGCATCACCGATGCAGAAGGCCTGCAACCCTATTGTGCCGACGAATTTATTTCCGCCCTACTCACCCG
CGCGCTGGCGCAAGAATCACACGAGCGCCTGACAGTGCGCCTCAAAGCCGCCATCGGCCAATTCGACAACGCCGCCATCT
ACACCATACACGGTTTCTGCCAGCGGCTGCTGCGCGATTACGCCTTTCTGTGCCAAGCCCCTTTCGATACCGAGCTGGCC
GAACACAGCCGCACGCGCCTGCTCACGCCCGCCCAAGATTTCTGGCGCACACAAGTGGCCGCCGATAACCACCAAGCACG
TTTGGCCTTCCAATACAAATACACGCCCGAGCGCATGCTGGCCGAAATCCAACCGTTTCTCAACCGCCCCTATTTGAGTT
TCAGACGGCCTGAAGCCGATTTGGCGCAAGCTGAACACAAGGTGCAGCAAACATGGCAGCGCATTGTTCCCATCCTGCCC
GAGCTGGCACAAACCTTTTGGCAGGTTCACCCGCAACTCAATGGCAACAACTACCGCAAAACCACTTTCGAGCCACTGTT
TGCCCGATTGCAGGCCGCCGCCGACAACGGCTGCCTGCCTAAACCCGAAGAAAAGCTGCCCATGCTGGCGGCCGACACCC
TGCAAAGCAAAACCAAAAAAACCGCCCGCCCCGATACAGCTGCCTTTGCCCGCCTGCAAGTGCTGGCCGATCTCGGCCGC
GATCTGGCTGCACAAAGCCAAGTCGAAACCGAAGCGCTGATTGCGCTGCCCCTAGACATGCTCGCCTACATCAACCACGC
CCTAGCCGAGCAAAAAAAATCCCAACGCGACCGCAGCTTTGACGACTTGCTGATCGACACCCACCAAGCCCTCACCTGCA
ACCCGCACCGCGCCGAGCTGGCCGCCGCCGCAGCCGCCAACTGGCGAGTGGCTCTGATTGACGAATTTCAAGATACCGAC
CCGCTGCAATACGAAATTTTCAACCGCATCTTTACCGCCCACGGCAACCCGCTGTTTCTTGTGGGCGACCCCAAGCAAGC
CATCTACAGCTTTCGCGGCGCCGATATCTACGCCTATCTGCAAGCGGCGCGCGATGCCGACCACCGCTACACCCTCGCCA
CCAACCGCCGCAGCCACCGCAAACTGATTAAAAGCATTGGCGCGCTGTTCCAACAAAAACAACACCCGTTTGTGTTGCCG
CACATCGATTACACCGATGTCGACGCCGCCCGCGCGCACAGCAACCTGACACCGCCGCGCAGCGCCGTGCAAGTGCGCTG
GATAGACGACAACCAGCAAATCATAACCAAAGAAATCCTGCGCAGCCGTGCCGCCGAATATTGCGCCGACGAAATCGCCG
CCGTGCTCAATCAGGCCGCGCAAGGCCGTCTGAATTTAAACGGCGCGCCGCTGCAATCGGGCGATATTGCCGTTTTGGTG
CGCACCCACAACGAAGGCGGCCTGATCAGCCGGGCGCTGAAAGCACGCAACGTACAAAGCGTGCTTTTGCAGCGCGAATC
GGTGTTTGCCACCGCCGAAGCCGCTGCCATTGCCGCCCTGATCGGCTTTTGGCTGCAACCGCAGCGCACCGAGCCGCTGC
GCTTTGTGTTGGGCAGCGTGCTGTTCCGGCAAACGGCCGACGAGCTTTACGCACTCAACCAAAACGAAGCAGCGCTGCTC
GATTGGATTACTTCTGCCGAAACCGCAGCCGCACAGTGGCAGCGGCACGGCTTTTACGCCGCCATGCAGCAATTCACCGC
CCGCCACGGCATCGAAACCCGCCTGCTGGCCGCCGACGACGAACGCAGCCTCACCAACTACCATCAAATTTTAGAAAAAC
TGGCCGAAGAAGACGAACAAAGCCACAGCCCCTCATCGCTGCACCAATGGCTGCTGGCGCAAATTCAGGCCGCCGGACAA
GGGCAGCGCAGCGACAGCCACCTGCTGCGGCTGGAAAGTGATGAAGCGCTGGTTAAAATTGTTACCATGCATGCCTCAAA
AGGCTTGCAATATCCGCTGGTTTTCTGCCCTTTTGTGTGGGACGCCCCCGACAACAAACCGGCAGCCTGGCAGATTCTGC
ACCGCAGCAACGGCAGCGAGCTGCTCGCCGACACCCAGCTTGACGAAGCCGACCAAATCCAGCTGGCCGACGAAGAAGCC
AGCGAACGCCTGCGCCTGCTTTACGTAGCACTGACCCGCGCCGAAGAACAGCTGGTGATTTACGCCGCCCATTGCAACCA
CACCGCCGTCAACACCTTCGCCTATCTGCTCGAAGGCGGCCGCCACAGCAACCGCAGCGACACACAGGCCGCCTATCTCG
CCGAAAAAAAAATCAACGATGCCGCAGGCGAAAAAGCCATGCTCTACAACAACTGGCAGCGCTTTATCGACCAAGCCCCG
GCAGACACTGAATTTGCATTTGTCGAAACCGCACCCGAGCCGGCCACAGGCCCTGCCGCCCGCCTTTCAGACGGCCATTA
TCAGGCCGTTGCCTTCCCGCCGCGGCCGTTTGACTTTATCCGCCACACCAGCTTTACCGGCTTAAGCCGCCACACCCAAA
CACGCGACCACGAACGCGACGAATTGCAGCCGGCCATCGACCCCGCCGAGGCCGCCGCCGCAGAAAACCCGCCCGAACAC
ACAACAACAGGCTCGCCCGGCGACATCCACCACTTTCCGCGCGGCGCCCAGGCCGGCATCTGCCTGCACGAATTGCTGGA
AAATTTTGACTTCAACACCGCCGCCGACAGCCGCAGCGAAGCGGTTTGCACCACGCTGGCCCGTTACGGCTTCGAAGCAG
AATGGCTAAATGCCGTTACCGCCATGCTCAATCACACCCGTCTGACACCGCTCACCGGCAGCCACGCCCTGGCCGACCAA
CCCGCCGCCCGCCGTCTGCCCGAAATGGCCTTTACGCTGCACATGCACGATTTCAAACTCAGCCGTTTGCGCGAATGGTT
TGCCCGCAGCAGCCTGCCGCCCGAATGCGCCGCCGCCGCACAATGGCTTGATTTTGCCGATGTAGAGGGCTATCTCAACG
GCTTTATCGATATGGTGTATCAAGATTCAGACGGCCAAGTGTGTATTATCGACTACAAATCCAACCACTTGGGCATGGGC
AGCGCCGACTACACGCCCCAAGCCATGAATGAAGCGATGGCCGAACACCACTATTACCTGCAAGCGCTGATTTACGCCAT
TGCCGTTGCCCGTTATTTCAAGCTCCGCAACCGAGCGCTGCCGGTTATTGCCGTGCGCTACCTTTTCCTGCGCGGGCTCG
ACGGCCGCGGCAACGGCGTATGGGCGTGGAACATTGATACCGCCGATTTGGCTGAATGGCTCTAG

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(977-1170)

UvrD-like helicase C-terminal domain (UvrD_C)

(450-822)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

58.789

100

0.594