Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OHA05_RS26055 Genome accession   NZ_CP108032
Coordinates   5810259..5812451 (+) Length   730 a.a.
NCBI ID   WP_313943866.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00306     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5805259..5817451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS26045 (OHA05_26055) - 5805339..5808248 (-) 2910 WP_328861850.1 tetratricopeptide repeat protein -
  OHA05_RS26050 (OHA05_26060) - 5808245..5810077 (-) 1833 WP_328861851.1 HSP90 family protein -
  OHA05_RS26055 (OHA05_26065) recG 5810259..5812451 (+) 2193 WP_313943866.1 ATP-dependent DNA helicase RecG Machinery gene
  OHA05_RS26060 (OHA05_26070) rsmD 5812524..5813108 (+) 585 WP_328861852.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OHA05_RS26065 (OHA05_26075) coaD 5813135..5813614 (+) 480 WP_313948853.1 pantetheine-phosphate adenylyltransferase -
  OHA05_RS26070 (OHA05_26080) - 5813710..5814786 (+) 1077 WP_313943864.1 cell division initiation protein -
  OHA05_RS26075 (OHA05_26085) - 5814977..5815591 (+) 615 WP_313943863.1 DUF177 domain-containing protein -
  OHA05_RS26080 (OHA05_26090) rpmF 5815594..5815767 (+) 174 WP_026165248.1 50S ribosomal protein L32 -
  OHA05_RS26085 (OHA05_26095) rnc 5815787..5816719 (+) 933 WP_328861853.1 ribonuclease III -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 79394.99 Da        Isoelectric Point: 5.9835

>NTDB_id=651785 OHA05_RS26055 WP_313943866.1 5810259..5812451(+) (recG) [Streptomyces sp. NBC_00306]
MDRVSALDEPLKKTLGAATAKVMAEQLDLHTTGDLLHHYPRRYEERGQLTRLAELPLDEDVTVVAQVADSRVHTFNAGRG
KRLEITITDGSGRLQLVFFGRGVHKPHQELLPGSRAMFAGKVSVFNRKLQLAHPTYAKLAADSGDDSADVESWAGALIPI
YPACKGLESWKIAKAVDAVLPSATEAVDPLPPALREGRGFVPLPEALLKVHRPHTKADIEDARQRLKWDEAFVLQVALAR
RRFAETQLPAVARRPVPGGLLDAFDAKLPFTLTDGQIKVTEEIFGDLATEHPMHRLLQGEVGSGKTMVALRAMLTVVDTG
GQAAMLAPTEVLAQQHHRSVVEMMGELAEGGMLGSAEKATKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKV
QFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKP
HFLARAWERVREEVGKGHQAYVVCPRIGDGEDEKTKKKSAEDEAEKRPPLAVLEIAEELSRGALDGLRVEVLHGRMAPDD
KDDVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEATPARARLG
AVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLTVIDDEEVIAAAREEAVTVVREDPELERLPELRTALDALLD
KERERYLDKG

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=651785 OHA05_RS26055 WP_313943866.1 5810259..5812451(+) (recG) [Streptomyces sp. NBC_00306]
ATGGATCGCGTGTCCGCGCTCGACGAACCCCTGAAGAAGACGCTCGGAGCCGCCACCGCGAAGGTGATGGCCGAGCAGCT
CGACCTGCACACCACCGGCGATCTGCTGCACCACTACCCCCGGCGTTATGAGGAGCGCGGCCAGCTCACCCGGCTCGCCG
AGCTGCCGCTGGACGAGGACGTCACCGTGGTCGCGCAGGTCGCCGACTCCCGGGTGCACACCTTCAACGCCGGCCGCGGC
AAGCGGCTGGAGATCACCATCACGGACGGCAGCGGCCGGCTCCAGCTGGTCTTCTTCGGCCGGGGTGTGCACAAACCGCA
CCAGGAACTGCTGCCCGGCAGCCGGGCGATGTTCGCCGGCAAGGTCTCCGTCTTCAACCGCAAGCTCCAGCTGGCCCACC
CGACGTACGCCAAACTCGCCGCCGACAGCGGGGACGACTCCGCCGACGTCGAGTCCTGGGCGGGCGCGCTCATCCCCATC
TACCCGGCCTGCAAGGGGCTGGAGTCGTGGAAGATCGCCAAGGCGGTCGACGCCGTGCTGCCGAGCGCCACGGAGGCGGT
CGATCCACTGCCGCCCGCGCTGCGAGAGGGACGCGGCTTCGTCCCGCTGCCCGAGGCGCTGCTGAAGGTCCACCGGCCGC
ACACCAAGGCCGACATCGAGGACGCCCGGCAGCGGCTGAAGTGGGACGAGGCGTTCGTGCTCCAGGTGGCGCTGGCCCGG
CGCCGCTTCGCGGAGACCCAACTGCCCGCCGTGGCCCGCCGGCCCGTCCCGGGCGGGCTGCTCGACGCCTTCGACGCCAA
GCTGCCCTTCACCCTCACCGACGGGCAGATCAAGGTCACCGAGGAGATCTTCGGCGACCTGGCCACCGAGCACCCGATGC
ACCGGCTGCTCCAGGGCGAGGTCGGCTCCGGCAAGACCATGGTCGCCCTGCGCGCCATGCTCACCGTGGTGGACACCGGC
GGTCAGGCGGCGATGCTCGCGCCCACCGAGGTCCTCGCCCAGCAGCACCACCGCTCCGTCGTCGAGATGATGGGCGAGCT
CGCCGAGGGCGGCATGCTCGGGAGCGCGGAGAAGGCCACCAAGGTCGTGCTGCTCACCGGTTCGATGGGCGCCGCCGCCC
GCCGGCAGGCGCTGCTCGACCTGGTGACCGGTGAGGCCGGCATCGTCATCGGCACCCATGCACTCATCGAGGACAAGGTG
CAGTTCCACGATCTCGGACTCGTCGTGGTCGACGAGCAGCACCGCTTCGGTGTGGAGCAGCGCGACGCCCTGCGCTCCAA
GGGGAAGCAGCCGCCGCATCTGCTGGTGATGACCGCGACCCCGATCCCGCGGACGGTCGCCATGACGGTCTTCGGTGACC
TGGAGACCTCCGTACTGGACCAGTTGCCCGCCGGCCGCTCACCCATCGCCACCCATGTCGTCCCGGCCCAGGACAAGCCG
CACTTCCTGGCACGCGCCTGGGAGCGCGTCCGCGAAGAGGTCGGCAAGGGCCACCAGGCGTATGTGGTGTGCCCCCGCAT
CGGCGACGGCGAGGACGAGAAGACGAAGAAGAAGTCCGCCGAGGACGAGGCGGAGAAGAGGCCGCCGCTCGCCGTCCTGG
AGATCGCCGAGGAGCTCTCCCGCGGAGCCCTCGACGGGCTGCGCGTCGAGGTCCTGCACGGCCGGATGGCGCCCGACGAC
AAGGACGACGTCATGCGCCGCTTCGCCGCGGGAGAGGTGGACGTCCTGGTCGCCACCACCGTGATCGAGGTCGGGGTCAA
CGTCCCGAACGCCACCGCCATGGTGATCATGGACGCGGACCGGTTCGGTGTCTCGCAGCTGCACCAGCTCCGCGGCCGGG
TGGGCCGTGGCTCCGCCCCCGGACTGTGCCTGCTGGTCACCGAGATGCCCGAGGCGACCCCGGCCAGGGCCCGGCTCGGC
GCGGTCGCCGCCACCCTCGACGGCTTCGAGCTCTCCCGTATCGACCTCGAACAGCGCCGCGAGGGCGATGTCCTCGGTCA
GGCCCAGTCGGGTGTGCGCTCCTCGCTGCGGATGCTCACCGTCATCGACGACGAGGAGGTCATCGCCGCCGCCCGCGAGG
AGGCCGTCACGGTCGTCCGCGAGGACCCGGAGCTGGAGCGGCTCCCCGAGCTGCGCACGGCCCTGGACGCCCTGCTGGAC
AAGGAGCGCGAGCGGTATCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(537-617)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(645-707)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-135)

DEAD/DEAH box helicase (DEAD)

(294-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

39.281

95.205

0.374