Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   LVJ83_RS05465 Genome accession   NZ_CP091508
Coordinates   1170681..1173938 (-) Length   1085 a.a.
NCBI ID   WP_244787658.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1165681..1178938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS05445 (LVJ83_05445) - 1166466..1167308 (-) 843 WP_034616062.1 SDR family oxidoreductase -
  LVJ83_RS05450 (LVJ83_05450) - 1167467..1168369 (-) 903 WP_244787066.1 LysR family transcriptional regulator -
  LVJ83_RS05455 (LVJ83_05455) - 1168608..1169585 (+) 978 WP_244787067.1 aldo/keto reductase -
  LVJ83_RS05460 (LVJ83_05460) - 1169643..1169942 (+) 300 WP_244787069.1 hypothetical protein -
  LVJ83_RS05465 (LVJ83_05465) recC 1170681..1173938 (-) 3258 WP_244787658.1 exodeoxyribonuclease V subunit gamma Machinery gene
  LVJ83_RS05470 (LVJ83_05470) waaF 1174385..1175407 (-) 1023 WP_244787071.1 lipopolysaccharide heptosyltransferase II -
  LVJ83_RS05475 (LVJ83_05475) betT 1175866..1177866 (+) 2001 WP_244787073.1 choline BCCT transporter BetT -
  LVJ83_RS05480 (LVJ83_05480) - 1178373..1178717 (-) 345 WP_244787075.1 hypothetical protein -
  LVJ83_RS05485 (LVJ83_05485) - 1178733..1178921 (-) 189 WP_244787077.1 zinc-finger domain-containing protein -

Sequence

Protein


Download         Length: 1085 a.a.        Molecular weight: 122199.24 Da        Isoelectric Point: 6.2657

>NTDB_id=651785 LVJ83_RS05465 WP_244787658.1 1170681..1173938(-) (recC) [Uruburuella testudinis strain CCUG 63373m]
MLYLHQSDRLENLARVFAGLQQLMPLENPLAPEEIVVQSQGMRRYLNTYLARELGVAANLKFSLPAGLTWRLMRECLPGI
PELSPFAPEVMRWRLLGLFQSEAFQTASEYRTAHTALQSYLNSSESAAYQLSGQLADIFDQYLVYRPQWITAWQQGQLIG
LGDDEIWQAALWRFLDDGSGHALHRVAMWQQLLDALSADKLPERLFVFGIATLAPMYLQLLQAVAEHCDVHIFALNPSSE
YWGNVIEAAQILNSSDDIDLSQSGHPLLASLGKQGRDFFDALAEAPITEEHSYFSEPLQTASLLKRLQHDIQTLSLPDAA
QSALLHDGSIRIHAAHSPLRELQILKDQLLAILAEHPDWQPHDIAVLTPNIEPYSPYIEAVFGQAQGGAQALPYSVSDVK
LSRRQPLLYALEQTLELLESRFEVDRLLPLLDSDLVLARFELSREDLPLLHDTIAALNIHWGLDGDMRRRHGAANTLFTW
QQGLERLVLGWLLPESSNPVWQNLSAWHSDPNQIAVFSRFSALIRTLAELYHSWQQPADISAWCERVRKLLAALFLPGTD
DQHALQQIEQALARWQAEAELAAFAGNLPQHTAIRHLQHFLSSQSQAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGNF
PRNTKAAAFDLIARHPQKGDRARRDDDRYLFLEAIISAREILYLSYVGRSISNDDELAPSALLSELIDTLAAMSGQRSSI
LAADLVQQHPLQAFSHRYFAPSARSDGLISSRSDYAAALNRPAAAGSTFFHAPLTEAAATAAIRQEDFIRFWRNPVRSWL
QHTLSWREPYTDEAWDAAEPFAPLHNGRITEAYTRARRLNHDFTRTAQRLNAESLLPEGELGRLWQQQFQTAAKSLDSQL
LHSPAQPPYAYTLTLGGHTLHGSLSQRHRHGLIYFLNEKPSAPEELAYQLQHLIFCAVRPPETDAYHSHLLLPGHTETLP
AIPQASARAQLQQWLAYFHLGQTRPLPFFARTSSATAKALLDNPADKRENAQQKARNEYRGNKKSTGQRDYTEVKLVFGR
DEHEPIDTPLFWNLVEDLLLPLLHSLHTDNTGQPQTDHAPTHNKV

Nucleotide


Download         Length: 3258 bp        

>NTDB_id=651785 LVJ83_RS05465 WP_244787658.1 1170681..1173938(-) (recC) [Uruburuella testudinis strain CCUG 63373m]
ATGCTCTATCTGCACCAATCCGACCGCTTGGAAAATCTTGCCCGTGTCTTCGCCGGGCTGCAACAGCTGATGCCGCTTGA
AAACCCCTTGGCACCTGAAGAAATCGTGGTGCAGAGCCAAGGCATGCGCCGTTATTTAAACACTTATCTGGCGCGTGAAT
TGGGCGTGGCGGCCAATCTCAAATTCAGCCTGCCGGCCGGGCTGACTTGGCGGCTGATGCGCGAGTGCCTGCCCGGCATT
CCCGAGCTGAGCCCGTTTGCGCCCGAAGTGATGCGCTGGCGGCTGCTGGGTCTGTTTCAAAGCGAAGCCTTTCAGACGGC
CTCTGAATACCGCACCGCCCATACCGCCCTGCAAAGCTATCTGAACAGCAGCGAATCGGCGGCTTATCAGCTTTCGGGGC
AACTGGCCGATATTTTCGACCAATACCTGGTTTACCGGCCGCAATGGATTACGGCCTGGCAGCAAGGGCAGCTCATCGGC
TTGGGGGATGATGAAATCTGGCAAGCCGCATTGTGGCGCTTTCTCGACGACGGCAGCGGCCACGCCCTGCACCGTGTCGC
CATGTGGCAGCAGCTGCTTGACGCACTCAGCGCCGACAAGCTGCCCGAGCGTTTGTTTGTGTTCGGCATCGCCACCCTGG
CGCCGATGTATCTGCAATTGCTGCAAGCCGTTGCCGAGCATTGCGACGTGCACATTTTTGCGCTCAATCCCAGCAGCGAA
TATTGGGGCAACGTAATTGAAGCGGCGCAGATTTTAAACAGCAGCGACGATATCGACCTCAGCCAGAGCGGCCACCCGCT
GCTGGCTTCGTTGGGCAAACAAGGGCGCGATTTTTTCGATGCGTTGGCCGAAGCGCCGATTACCGAAGAACACAGCTATT
TCAGCGAGCCGCTTCAGACGGCCTCATTATTGAAACGGCTGCAACACGACATTCAAACCCTTTCCCTGCCCGATGCCGCA
CAAAGTGCCCTGCTGCACGACGGCTCCATCCGCATTCATGCCGCCCACAGCCCCCTGCGCGAATTGCAGATATTGAAAGA
CCAACTGCTCGCCATATTGGCCGAACACCCCGATTGGCAGCCGCACGATATCGCCGTCCTCACCCCCAATATCGAGCCTT
ACAGCCCCTATATCGAAGCCGTGTTCGGGCAGGCTCAAGGCGGCGCACAGGCTTTGCCGTATTCTGTTTCCGACGTCAAA
CTCAGCCGCCGCCAGCCGCTTTTATACGCGCTCGAACAAACACTGGAGCTGTTGGAAAGCCGTTTTGAAGTCGACCGGCT
GCTGCCCCTGCTCGACAGCGATTTGGTGCTGGCACGCTTTGAACTGAGCCGCGAAGACCTGCCGCTTTTGCACGACACCA
TAGCCGCACTCAACATACATTGGGGGCTCGACGGCGACATGCGCCGCCGCCACGGCGCCGCCAATACCTTGTTTACCTGG
CAGCAAGGGCTGGAACGGCTGGTGCTGGGCTGGCTGCTGCCCGAAAGCAGCAACCCCGTGTGGCAAAACCTCAGCGCCTG
GCACAGCGACCCCAACCAAATCGCCGTATTCAGCCGTTTCAGCGCCCTCATCCGCACCTTGGCCGAGCTTTACCACAGTT
GGCAGCAGCCCGCCGATATCAGCGCCTGGTGCGAGCGTGTGCGCAAACTGCTGGCCGCCCTCTTCCTGCCCGGCACCGAC
GACCAACACGCACTGCAACAAATCGAGCAAGCCCTCGCCCGATGGCAGGCAGAAGCCGAGTTGGCCGCATTCGCAGGCAA
CCTGCCGCAACACACCGCCATCCGGCATCTGCAACATTTTCTCAGCAGCCAGAGCCAGGCCGGCTTTTTACGCGGCGGCA
TCACCTTTTGCAGCATGGTGCCGATGCGCAGCCTGCCGTTTAAAGTCATTTGCCTGCTGGGGCTGAACGACGGCAATTTT
CCGCGCAACACCAAAGCCGCCGCCTTCGACCTTATCGCCCGCCACCCGCAAAAAGGCGACCGCGCCCGCCGCGACGACGA
CCGCTACCTATTTCTCGAAGCCATCATCAGCGCCCGCGAAATCCTGTATTTATCTTATGTAGGGCGCAGCATCAGCAACG
ACGACGAGCTGGCGCCCTCCGCCCTGCTGAGCGAGCTTATCGACACCCTCGCCGCCATGAGCGGGCAACGCAGCAGCATA
CTGGCCGCCGATTTGGTGCAACAACACCCGTTGCAAGCCTTTTCACACCGCTATTTTGCACCCTCTGCCCGTTCAGACGG
CCTCATCAGCAGCCGCAGCGATTATGCAGCAGCACTCAACCGGCCCGCAGCAGCCGGCAGCACTTTTTTCCACGCACCGC
TCACCGAAGCCGCCGCCACCGCAGCAATCCGGCAAGAAGACTTTATCCGCTTTTGGCGCAACCCTGTGCGCAGCTGGCTG
CAACACACCCTGAGCTGGCGCGAGCCCTACACCGATGAAGCCTGGGATGCCGCCGAACCGTTTGCCCCATTGCACAACGG
CCGTATCACCGAAGCCTACACCCGCGCCCGCCGTCTGAATCACGACTTCACCCGCACCGCGCAACGCCTGAATGCCGAAA
GCCTGTTGCCCGAAGGCGAACTCGGCCGCCTGTGGCAGCAGCAGTTTCAAACCGCTGCAAAATCACTCGACAGCCAACTG
CTGCACAGCCCCGCACAGCCGCCCTATGCCTACACCCTCACCCTTGGCGGCCACACCCTGCACGGCAGCCTGAGCCAACG
CCACCGGCACGGCCTGATTTATTTTCTCAACGAAAAACCTTCCGCACCCGAAGAGCTCGCCTATCAGTTGCAACACCTGA
TTTTCTGCGCCGTCAGGCCGCCTGAAACCGATGCTTACCACAGCCACCTGCTGCTGCCCGGCCACACCGAAACCCTGCCC
GCCATCCCGCAGGCATCCGCACGGGCGCAACTGCAACAATGGCTGGCCTACTTCCACCTCGGCCAAACCCGCCCGCTGCC
CTTTTTCGCCAGAACCTCATCAGCCACCGCCAAAGCATTGCTCGACAACCCAGCCGACAAACGCGAAAACGCACAACAAA
AAGCACGCAACGAATACCGCGGCAACAAAAAAAGCACCGGCCAGCGCGACTATACCGAAGTCAAACTGGTATTCGGCCGC
GACGAACACGAACCGATCGACACCCCGCTGTTTTGGAACCTCGTGGAAGATTTACTGCTGCCTCTGCTGCATTCGCTGCA
CACAGACAACACCGGCCAACCACAAACCGACCATGCGCCAACGCACAATAAAGTTTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(782-999)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

61.209

99.078

0.606