Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA05_RS20305 Genome accession   NZ_CP108032
Coordinates   4552458..4553912 (-) Length   484 a.a.
NCBI ID   WP_313944916.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00306     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4547458..4558912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS20280 (OHA05_20290) - 4547460..4548131 (-) 672 WP_313944921.1 hypothetical protein -
  OHA05_RS20285 (OHA05_20295) - 4548119..4548724 (-) 606 WP_313944920.1 SigE family RNA polymerase sigma factor -
  OHA05_RS20290 (OHA05_20300) - 4548909..4549814 (-) 906 WP_313944919.1 A/G-specific adenine glycosylase -
  OHA05_RS20295 (OHA05_20305) - 4550392..4551219 (+) 828 WP_313944918.1 hypothetical protein -
  OHA05_RS20300 (OHA05_20310) disA 4551289..4552413 (-) 1125 WP_313944917.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA05_RS20305 (OHA05_20315) radA/sms 4552458..4553912 (-) 1455 WP_313944916.1 DNA repair protein RadA Machinery gene
  OHA05_RS20310 (OHA05_20320) - 4554148..4555812 (+) 1665 WP_328861363.1 hypothetical protein -
  OHA05_RS20315 (OHA05_20325) - 4556850..4557653 (-) 804 WP_328861364.1 hypothetical protein -
  OHA05_RS20320 (OHA05_20330) - 4557694..4558626 (+) 933 WP_313944913.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 50923.05 Da        Isoelectric Point: 8.0102

>NTDB_id=651769 OHA05_RS20305 WP_313944916.1 4552458..4553912(-) (radA/sms) [Streptomyces sp. NBC_00306]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTIEEYGAPAVRTTAAGRVSTAALPIGQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIGALHDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTILVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDAPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKVPAGMKVTEVADVGDALRVLPRGRQRGSEGAPVTAPRKERAEAPRDD
DTRR

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=651769 OHA05_RS20305 WP_313944916.1 4552458..4553912(-) (radA/sms) [Streptomyces sp. NBC_00306]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGCACGATCGAGGAGTACGGCGCGCCCGCCGTCCGCACCACCGCCGCCGGCC
GCGTCTCCACCGCCGCGCTGCCCATCGGCCAGGTCGACGGACGACAGGCGACGGCCCGCTCCACCGGGGTGGACGAGCTC
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGCGCTGTCGTGCTGCTCGCCGGTGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTCGCCGCCAAGGCCGCGAGCGACGAGCACCGGACTCTGTATGTGACGGGCGAGGAATCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCGGCGCCCTGCACGACCATCTGTATCTGGCGGCCGAGACCGATCTGTCCGCCGTTCTC
GGGCACTTGGACGCGGTCAAGCCGTCGCTGCTGGTCCTCGACTCCGTCCAGACCGTCGCCTCCCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCGCTGATCCGCGCGTCCAAGGAGCGCGGGATGTCCACGATCC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGACCGCGGCTGCTGGAGCACCTCGTCGACGTCGTGCTCTCCTTC
GAGGGCGACCGGCACGCGCGGCTGCGTCTCGTACGGGGCGTCAAGAACCGTTACGGAGCGACGGACGAAGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGACTCGCGGACCCCTCGGGCCTGTTCCTGACCCGCCGGGACGCGCCCGTGCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGTCGCCCGCTCGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACGACCTCGGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCACCGCTCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCGGAGCCCGCGGCGGACCTGG
CGATCGCGCTCGCCCTGGCCTCCGCCGCCAGCGACACCCCACTGCCGAAGAACCTGGTCGCGATCGGTGAGGTCGGCCTC
GCCGGCGAGGTGAGACGCGTCACGGGCGTGCAGCGCCGGCTCTCCGAGGCCCACCGTCTCGGCTTCACCCACGCCCTGGT
CCCGTCCGACCCGGGCAAGGTGCCCGCGGGCATGAAGGTGACGGAAGTGGCCGATGTCGGAGACGCTCTGAGGGTGCTGC
CGCGCGGGCGGCAGAGGGGTTCGGAGGGGGCTCCGGTCACGGCACCGCGCAAAGAGCGTGCGGAGGCCCCACGGGACGAC
GACACGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

93.595

0.415
  radA Streptococcus pneumoniae Rx1

42.699

93.388

0.399
  radA Streptococcus pneumoniae D39

42.699

93.388

0.399
  radA Streptococcus pneumoniae R6

42.699

93.388

0.399
  radA Streptococcus pneumoniae TIGR4

42.699

93.388

0.399
  radA Streptococcus mitis SK321

44.159

88.43

0.39
  radA Streptococcus mitis NCTC 12261

44.159

88.43

0.39