Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA05_RS12625 Genome accession   NZ_CP108032
Coordinates   2871851..2872501 (+) Length   216 a.a.
NCBI ID   WP_328860629.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00306     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2866851..2877501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS12605 (OHA05_12625) - 2868486..2868827 (+) 342 WP_313946218.1 hypothetical protein -
  OHA05_RS12610 (OHA05_12630) - 2868888..2869631 (-) 744 WP_328860626.1 ABC transporter permease -
  OHA05_RS12615 (OHA05_12635) - 2869628..2870563 (-) 936 WP_328860627.1 ATP-binding cassette domain-containing protein -
  OHA05_RS12620 (OHA05_12640) - 2870671..2871846 (+) 1176 WP_328860628.1 histidine kinase -
  OHA05_RS12625 (OHA05_12645) vraR 2871851..2872501 (+) 651 WP_328860629.1 response regulator transcription factor Regulator
  OHA05_RS12630 (OHA05_12650) - 2872608..2874290 (-) 1683 WP_328860630.1 thiamine pyrophosphate-binding protein -
  OHA05_RS12635 (OHA05_12655) speB 2874287..2875267 (-) 981 WP_313946212.1 agmatinase -
  OHA05_RS12640 (OHA05_12660) - 2875309..2876784 (-) 1476 WP_313946211.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22926.55 Da        Isoelectric Point: 5.1288

>NTDB_id=651748 OHA05_RS12625 WP_328860629.1 2871851..2872501(+) (vraR) [Streptomyces sp. NBC_00306]
MPISVLLVDDEPLVRAGLRAVLEAQPDIEVTGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVTDPPKI
LVITTFENDEYVYEALRAGAAGFLLKRARPTEIVHAVRLVAEGESLLFPAAVRSLAAEYGSGTARAAMERAALTEREAAV
LRLMARGLTNAEIAAHLVVGTETVKTHVSAVLGKLGARDRTQAVIAAYESGFVTPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=651748 OHA05_RS12625 WP_328860629.1 2871851..2872501(+) (vraR) [Streptomyces sp. NBC_00306]
GTGCCGATCTCCGTACTCCTCGTCGACGACGAACCCCTGGTCCGGGCCGGGCTGCGGGCCGTCCTGGAGGCGCAGCCGGA
CATCGAGGTGACCGGTGAGGCGGCCGACGGCGCGGCGGTGATACCGCTGGTGCGCCAACTGCGCCCCGATGTGGTGGCGA
TGGACGTCCGGATGCCCCTGCTCGACGGCATCGAGGCGACGCGCGCCGTGCTGCGGACGGTCACCGATCCGCCGAAGATC
CTGGTCATCACGACCTTCGAGAACGACGAGTACGTCTACGAGGCCCTGCGTGCCGGCGCCGCGGGCTTTCTGCTCAAGCG
GGCCCGCCCCACCGAGATCGTGCACGCGGTCCGGCTCGTCGCGGAGGGCGAGTCGCTGCTCTTCCCGGCCGCGGTGCGTT
CGCTGGCCGCGGAGTACGGCAGCGGCACCGCCCGTGCGGCGATGGAGCGCGCCGCGCTGACCGAGCGGGAGGCGGCGGTG
CTGCGGCTGATGGCGCGCGGTCTGACGAACGCGGAGATCGCCGCGCACCTGGTCGTCGGCACGGAGACGGTCAAGACCCA
TGTCAGCGCCGTACTGGGGAAGCTGGGCGCCCGCGACCGTACCCAGGCGGTCATCGCCGCGTACGAGTCGGGGTTCGTCA
CACCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.455

100

0.412