Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVJ78_RS06295 Genome accession   NZ_CP091507
Coordinates   1399351..1400733 (+) Length   460 a.a.
NCBI ID   WP_132954408.1    Uniprot ID   A0AAE9GZ99
Organism   Uruburuella suis strain 1258/02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1394351..1405733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS06270 (LVJ78_06270) - 1395348..1396691 (+) 1344 WP_132954392.1 aldehyde dehydrogenase family protein -
  LVJ78_RS06275 (LVJ78_06275) - 1396727..1397434 (+) 708 WP_207894325.1 toxin-antitoxin system YwqK family antitoxin -
  LVJ78_RS06280 (LVJ78_06280) - 1397549..1397980 (+) 432 WP_132954390.1 Mpo1-like protein -
  LVJ78_RS06290 (LVJ78_06290) - 1398639..1399127 (-) 489 WP_132954389.1 hypothetical protein -
  LVJ78_RS06295 (LVJ78_06295) radA 1399351..1400733 (+) 1383 WP_132954408.1 DNA repair protein RadA Machinery gene
  LVJ78_RS06300 (LVJ78_06300) - 1400999..1402417 (-) 1419 WP_132954388.1 DASS family sodium-coupled anion symporter -
  LVJ78_RS06305 (LVJ78_06305) - 1402642..1403715 (-) 1074 WP_132954387.1 sulfate/molybdate ABC transporter ATP-binding protein -
  LVJ78_RS06310 (LVJ78_06310) cysW 1403712..1404569 (-) 858 WP_132954386.1 sulfate ABC transporter permease subunit CysW -
  LVJ78_RS06315 (LVJ78_06315) cysT 1404566..1405402 (-) 837 WP_132954385.1 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49439.04 Da        Isoelectric Point: 6.8876

>NTDB_id=651746 LVJ78_RS06295 WP_132954408.1 1399351..1400733(+) (radA) [Uruburuella suis strain 1258/02]
MAKAPKTVYQCSECGGTSPKWQGKCPHCGEWNTLQESLAVPEPKNARFQSWAADVSQVQDLSKVTAMEVPRSPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAQSRKVLYVSGEESAQQVALRAQRLGLHSEGVNLLAEIRMEAIQAA
LKQHEPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGISMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAMKNRFGAANELGVFAMTEQGLKGVSNPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKINEPAADLAIILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEYPGLEIFGVASLQEAVDVCRTAADG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=651746 LVJ78_RS06295 WP_132954408.1 1399351..1400733(+) (radA) [Uruburuella suis strain 1258/02]
ATGGCAAAAGCGCCGAAAACGGTTTATCAATGCAGCGAATGCGGCGGCACTTCGCCCAAGTGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACTTTGCAGGAAAGCCTGGCGGTGCCGGAGCCGAAAAATGCGCGTTTTCAATCGTGGGCGGCGG
ATGTGTCGCAAGTGCAGGATTTATCGAAAGTCACGGCTATGGAAGTGCCGCGCAGCCCCACGGGCATGGGCGAGCTTGAT
CGGGTGCTCGGCGGCGGCCTGGTGGATGGCGCGGTGATTTTGCTCGGCGGCGATCCGGGCATCGGCAAATCCACGCTTTT
GCTGCAAACCATCGCGCTGATGGCGCAAAGCCGCAAGGTTTTGTATGTGTCGGGCGAGGAATCGGCGCAGCAAGTGGCTT
TGCGTGCGCAACGTTTGGGCTTGCACAGCGAAGGTGTGAATTTGCTGGCGGAAATCCGCATGGAAGCAATCCAAGCGGCC
TTAAAGCAGCACGAGCCGGCGGTGGTGGTGATCGATTCGATTCAAACCATGTATTCCGACCAAATCACGTCCGCGCCGGG
CTCGGTGTCGCAAGTGCGCGAATGTGCGGCGCAGCTCACGCGCATGGCCAAGCAGATGGGCATTTCGATGATTTTGGTGG
GGCATGTTACCAAAGATGGTGCGATTGCCGGCCCGCGCGTGCTCGAGCATATGGTGGACACGGTGCTTTATTTCGAGGGC
GACCAGCATTCCAATTACCGCATGATACGGGCGATGAAAAACCGCTTCGGTGCGGCCAATGAGCTGGGCGTGTTTGCGAT
GACCGAGCAGGGATTGAAAGGCGTGTCTAACCCATCGGCGATTTTTTTGGCGAGCTATCGCGATGATGTGCCCGGCTCGT
GCGTGTTGGTCACACAAGAAGGCTCGAGGCCGCTGCTGGTGGAAATTCAGGCACTGGTGGACGATGCGCACGGCTTCACG
CCCAAGCGGCTCACGGTGGGGCTGGAGCAAAACCGCCTGGCCATGCTCTTGGCCGTGCTCAACCGCCATGCCGGCATTGC
CTGCTTTGATCAGGATGTGTTTTTGAATGCGGTGGGCGGGGTGAAAATCAACGAGCCGGCCGCCGATTTGGCGATTATTC
TGGCCATGCTCTCCAGCTTCCGCAACCGGCCGCTGCCGGAAAAAATGGTGGCTTTCGGCGAAATCGGCCTGAGCGGCGAA
GTGCGCCCGGTGGCGCGCGGGCAGGAGCGCCTGAAGGAAGCGGAAAAGCTGGGCTTCAAGCGCGCCATTGTGCCCAAGGC
CAATATGCCGCGCAATGCGAAAGAATATCCGGGGTTGGAAATTTTCGGCGTGGCCAGTTTGCAGGAAGCGGTGGATGTGT
GCCGCACGGCGGCGGACGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.078

100

0.515
  radA Streptococcus mitis SK321

47.903

98.478

0.472
  radA Streptococcus pneumoniae Rx1

47.149

99.13

0.467
  radA Streptococcus pneumoniae D39

47.149

99.13

0.467
  radA Streptococcus pneumoniae R6

47.149

99.13

0.467
  radA Streptococcus pneumoniae TIGR4

47.149

99.13

0.467
  radA Streptococcus mitis NCTC 12261

47.461

98.478

0.467