Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   LVJ78_RS06015 Genome accession   NZ_CP091507
Coordinates   1344202..1347840 (+) Length   1212 a.a.
NCBI ID   WP_132954892.1    Uniprot ID   A0AAE9H2C4
Organism   Uruburuella suis strain 1258/02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1339202..1352840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS05995 (LVJ78_05995) - 1341050..1341940 (-) 891 WP_132954889.1 NAD(+) kinase -
  LVJ78_RS06000 (LVJ78_06000) - 1341924..1342166 (+) 243 WP_132954890.1 hypothetical protein -
  LVJ78_RS06005 (LVJ78_06005) msrA 1342188..1342718 (-) 531 WP_132954891.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LVJ78_RS06010 (LVJ78_06010) - 1342849..1344078 (-) 1230 WP_132954894.1 MFS transporter -
  LVJ78_RS06015 (LVJ78_06015) recB 1344202..1347840 (+) 3639 WP_132954892.1 exodeoxyribonuclease V subunit beta Machinery gene
  LVJ78_RS06020 (LVJ78_06020) - 1348022..1348786 (-) 765 WP_244802560.1 IS5 family transposase -
  LVJ78_RS06025 (LVJ78_06025) - 1349127..1350026 (-) 900 WP_132954870.1 LysR family transcriptional regulator -
  LVJ78_RS06030 (LVJ78_06030) - 1350125..1350556 (+) 432 WP_243650406.1 CidA/LrgA family protein -
  LVJ78_RS06035 (LVJ78_06035) - 1350584..1351282 (+) 699 WP_132954869.1 LrgB family protein -
  LVJ78_RS06040 (LVJ78_06040) - 1351551..1351820 (+) 270 WP_132954868.1 YihD family protein -
  LVJ78_RS06045 (LVJ78_06045) rnc 1352085..1352804 (+) 720 WP_132954867.1 ribonuclease III -

Sequence

Protein


Download         Length: 1212 a.a.        Molecular weight: 135589.54 Da        Isoelectric Point: 6.0878

>NTDB_id=651743 LVJ78_RS06015 WP_132954892.1 1344202..1347840(+) (recB) [Uruburuella suis strain 1258/02]
MTAQPFHPLDIPIHGTNLIEASAGTGKTWGIAALFTRLIVLEKMPVEQILVVTFTKAATAELKTRLRARLDEALQTLEIL
GSADEAAHAADDAEALAALYRLHSDDAPPDGFIFDLLHRALQNENLPRLTVRLKAAISQFDNAAIYTIHGFCQRLLRDYA
FLCQAPFDTELAEHKRERLLTPAQDFWRTEVAADVHKARLVFKHRYTPENMLAEIQKYLSRPYLAFRRPEVDLAAAEAVL
QQSWQNIMPKLPELIETFWKIHPALNGNIYRKNTFEKLFAELMSAAATGTLPQDKDGKLMMLSAAMLEDKLKKGQSANAA
AFARLQALADLGHYLDEQNMAEENALIALQIDLLTHINHALAEQKKSSRERGFDDLLLDVHHALSQSPQRALLAETVAKN
WRVALIDEFQDTDPLQYAIFQHTFIAHGNPLFLVGDPKQAIYSFRGADIYAYLQAAEDAEHHYTLATNRRSHAQLINGIS
ALFRQKAQPFVLPHIDYANVDAARAKSRLAPPRTAIQVRWIDDDAQILKKDTLRRRAADYCADEIAAALTEAAEGRLNYD
GAPLQSGQIAVLVRTHNEGSLVSQALRARGVQSVLLHRESVFAAPEAQALAALIGFWLQPQRTEPLRFVLGGVLFRQSAA
ELYALNYDEAALLEWIHSAEAAALQWQQHGFYAAMQQFAARHGIETRLLAGGNSRSLTNYHQLLEKLAEEDEQNHNPAAL
QQWLLAEIQAAKQGRSSEAHLLRLESDEALVKIVTMHAAKGLQYPLVYCPFVWDAPSGKPDSWQILHRQDQSEWLAKSQL
EEADLQQLAEEEASERLRLLYVALTRAEEQLTLYAAHCDNTAANTFAYLLEGGCDSRFADTAAAYAAEKKANKAEGEKAM
LRRNWQRFIGQAPENSDFVFTAEAPPEIARAPVAGFSDGHYQAAAMPARSFEFIRHTSFTGLSRHVHTRDDAREELQPAI
DPAEALSDERPSESLASLADNPHDIYHFPRGAHAGVCLHELLEHFDFSRPAAEQSEAARQALTRYGFDESWLEAANGMLD
AARLTPLTGSHTLAAQPAARRLPEMAFTLHMHDFRLDHLRAWFAGPHLKLPAACIAAAQWLAFQDLQGYLNGFIDMVYQD
ADGQVCIIDYKSNHLGMHESDYHQEAMNEAMAAHHYYLQALIYAIAVARYFKLRGQALPRIAVRYLFLRGMDGSGKGVWA
WDIDTADLAAWL

Nucleotide


Download         Length: 3639 bp        

>NTDB_id=651743 LVJ78_RS06015 WP_132954892.1 1344202..1347840(+) (recB) [Uruburuella suis strain 1258/02]
ATGACTGCCCAGCCTTTCCACCCGCTCGATATTCCCATTCACGGCACCAATCTGATTGAAGCCTCGGCCGGCACCGGTAA
AACCTGGGGCATTGCCGCCTTGTTTACACGGCTGATTGTGCTGGAAAAAATGCCGGTGGAGCAGATTTTGGTGGTCACGT
TTACCAAGGCGGCCACCGCCGAATTGAAAACCCGCCTGCGTGCGCGGCTCGATGAAGCCTTGCAGACGCTGGAAATATTG
GGCAGCGCCGATGAAGCCGCGCACGCGGCGGACGATGCCGAAGCCTTGGCCGCACTTTATCGCCTGCACAGCGATGATGC
GCCGCCCGATGGCTTTATTTTCGATTTGCTGCACCGCGCCTTGCAAAATGAAAATCTGCCGCGCCTGACGGTGCGCCTCA
AAGCCGCCATCAGCCAGTTTGACAACGCCGCCATCTACACCATCCACGGCTTTTGCCAGCGGCTGTTACGCGATTATGCC
TTTCTCTGCCAAGCGCCGTTCGACACCGAATTGGCCGAACACAAACGCGAACGCCTACTCACGCCCGCGCAAGATTTCTG
GCGCACCGAAGTGGCCGCCGATGTGCACAAAGCGCGTTTGGTGTTCAAACACCGCTACACCCCCGAAAACATGCTGGCCG
AAATCCAAAAATACCTCAGCCGCCCTTATTTGGCTTTCAGACGGCCTGAAGTGGATTTGGCCGCCGCCGAAGCGGTTTTG
CAGCAAAGCTGGCAAAATATTATGCCCAAGCTGCCCGAGCTGATTGAAACTTTCTGGAAAATCCACCCCGCGCTCAACGG
CAATATCTACCGCAAAAACACCTTTGAAAAGCTGTTTGCCGAGCTGATGAGCGCCGCCGCAACCGGCACGCTGCCGCAAG
ATAAAGACGGCAAGCTGATGATGCTTTCCGCCGCCATGTTGGAAGACAAACTCAAAAAAGGCCAAAGCGCCAATGCAGCC
GCATTCGCCCGCCTGCAAGCCTTGGCCGATCTCGGCCATTATCTGGATGAGCAAAACATGGCCGAAGAAAACGCGCTGAT
TGCCTTGCAGATCGATTTGCTCACCCACATCAACCATGCGCTGGCCGAGCAGAAAAAAAGCAGCCGCGAGCGCGGCTTCG
ACGATTTGTTGCTCGATGTGCACCACGCGCTCAGCCAAAGTCCGCAGCGTGCGCTTTTGGCCGAAACCGTGGCGAAAAAC
TGGCGCGTGGCGCTGATCGACGAATTTCAAGACACCGACCCGCTGCAATATGCCATTTTTCAGCATACCTTTATCGCCCA
CGGCAACCCGCTGTTTCTCGTGGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCCGATATTTACGCTTATCTGC
AAGCAGCCGAAGATGCCGAACACCACTACACGCTCGCCACCAACCGCCGCAGCCACGCGCAACTGATCAACGGTATCAGC
GCTTTGTTCCGGCAAAAAGCGCAGCCTTTCGTGCTGCCCCATATCGATTATGCGAACGTGGATGCTGCGCGCGCAAAAAG
CCGCTTAGCGCCGCCGCGCACGGCTATTCAGGTGCGCTGGATTGATGACGATGCGCAGATTTTGAAAAAAGACACCTTGC
GCCGCCGCGCGGCCGATTATTGCGCCGACGAAATCGCCGCTGCGCTAACCGAAGCCGCCGAAGGCCGCCTGAATTATGAT
GGCGCGCCGCTGCAATCAGGGCAGATTGCCGTGCTGGTGCGCACCCATAACGAGGGCAGCCTCGTGAGCCAAGCTTTGAG
GGCGCGCGGCGTGCAAAGCGTGCTGCTGCACCGCGAATCGGTGTTTGCCGCGCCCGAAGCCCAAGCGCTGGCTGCGCTGA
TCGGCTTTTGGCTGCAACCGCAGCGCACCGAGCCGCTGCGCTTTGTGCTCGGCGGCGTGTTGTTCCGCCAAAGCGCTGCC
GAGCTTTACGCGCTCAACTACGATGAAGCCGCGTTGCTCGAGTGGATACATTCTGCCGAGGCCGCCGCCTTGCAATGGCA
GCAACACGGCTTTTATGCCGCCATGCAGCAATTTGCCGCGCGCCACGGCATCGAAACGCGCCTGCTCGCCGGCGGCAACA
GCCGCAGCCTCACCAATTACCACCAGCTTTTGGAAAAGCTCGCCGAAGAAGACGAGCAAAACCACAACCCCGCCGCTTTG
CAGCAATGGCTGCTGGCCGAAATCCAAGCCGCCAAACAAGGCCGCAGCAGCGAGGCGCATTTGTTGCGGCTGGAAAGCGA
TGAAGCGCTGGTGAAAATCGTCACCATGCATGCGGCAAAAGGGCTGCAATATCCGCTGGTTTATTGCCCGTTTGTGTGGG
ATGCCCCCAGCGGCAAGCCCGACAGCTGGCAGATTCTGCACCGGCAAGATCAGAGCGAATGGCTGGCCAAAAGTCAGCTT
GAAGAAGCCGATTTGCAGCAATTGGCCGAAGAAGAAGCCAGCGAGCGCCTGCGCCTGCTTTATGTGGCGCTCACCCGCGC
CGAAGAGCAGCTCACGCTTTATGCCGCCCATTGCGACAACACCGCCGCCAACACCTTTGCCTATCTGCTCGAAGGCGGCT
GCGACAGCCGCTTTGCCGACACCGCCGCCGCTTATGCGGCCGAGAAAAAAGCCAATAAGGCAGAGGGCGAGAAAGCGATG
TTGCGGCGCAACTGGCAGCGCTTTATCGGGCAAGCGCCTGAAAACAGCGATTTTGTGTTCACCGCAGAAGCGCCGCCCGA
AATCGCCCGCGCACCTGTCGCCGGCTTTTCAGACGGCCATTATCAAGCCGCCGCCATGCCCGCACGCAGCTTTGAATTTA
TCCGCCACACCAGCTTCACCGGCCTGAGCCGCCATGTGCACACACGCGATGATGCGCGCGAGGAATTGCAGCCGGCCATC
GATCCGGCTGAGGCCTTGTCTGACGAGAGGCCGTCTGAAAGCCTTGCAAGCCTTGCTGATAATCCGCACGATATTTATCA
TTTTCCGCGCGGCGCACATGCCGGTGTGTGTTTGCACGAATTGCTCGAGCATTTCGATTTCAGCCGACCGGCCGCCGAGC
AAAGCGAAGCCGCCCGTCAAGCCTTAACGCGCTACGGCTTTGACGAAAGCTGGCTGGAAGCGGCAAACGGCATGCTCGAT
GCCGCCCGCCTCACACCGCTCACCGGCAGCCACACTTTAGCCGCGCAGCCCGCCGCCCGCCGCCTGCCCGAAATGGCGTT
TACCCTGCATATGCACGATTTCCGGCTCGATCACTTGCGCGCCTGGTTTGCCGGCCCGCATCTCAAGCTGCCCGCCGCCT
GCATTGCTGCGGCGCAATGGCTGGCTTTTCAAGATCTGCAAGGCTATCTCAACGGCTTTATCGACATGGTGTATCAAGAC
GCCGACGGCCAAGTGTGCATCATCGACTACAAATCCAATCATCTGGGCATGCACGAATCGGATTACCACCAAGAAGCCAT
GAACGAAGCCATGGCTGCGCATCATTATTATCTGCAAGCGCTGATTTACGCGATTGCCGTTGCGCGCTATTTCAAGCTGC
GCGGGCAGGCCTTGCCGCGTATCGCCGTGCGCTATCTGTTTTTGCGCGGGATGGACGGCAGCGGCAAAGGCGTGTGGGCA
TGGGATATCGACACCGCCGATTTGGCCGCATGGCTTTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(464-834)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-459)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(993-1189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

58.45

100

0.585