Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   LVJ78_RS05445 Genome accession   NZ_CP091507
Coordinates   1221586..1223325 (+) Length   579 a.a.
NCBI ID   WP_132952409.1    Uniprot ID   A0AAE9GY35
Organism   Uruburuella suis strain 1258/02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1216586..1228325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS05435 (LVJ78_05435) - 1216809..1217750 (+) 942 WP_132952413.1 ornithine cyclodeaminase family protein -
  LVJ78_RS05440 (LVJ78_05440) putA 1217902..1221495 (+) 3594 WP_132952411.1 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA -
  LVJ78_RS05445 (LVJ78_05445) recD 1221586..1223325 (+) 1740 WP_132952409.1 exodeoxyribonuclease V subunit alpha Machinery gene
  LVJ78_RS05450 (LVJ78_05450) - 1223937..1225535 (-) 1599 WP_132952407.1 YdgA family protein -
  LVJ78_RS05455 (LVJ78_05455) - 1225575..1225829 (-) 255 WP_132952405.1 hypothetical protein -
  LVJ78_RS05460 (LVJ78_05460) - 1226051..1226701 (-) 651 WP_132952403.1 hypothetical protein -
  LVJ78_RS05465 (LVJ78_05465) - 1226854..1227204 (+) 351 WP_132952401.1 arsenate reductase -
  LVJ78_RS05470 (LVJ78_05470) - 1227208..1227951 (+) 744 WP_132952399.1 UDP-2,3-diacylglucosamine diphosphatase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 62234.34 Da        Isoelectric Point: 6.6641

>NTDB_id=651742 LVJ78_RS05445 WP_132952409.1 1221586..1223325(+) (recD) [Uruburuella suis strain 1258/02]
MTVHSDADLNQAAADAACSFLQHYAPAAAPLAVPYVPRLFAALADGHSFIWLSAAEAAALAEAAPLVSRGGNTPLVLLER
RLFLGRMWQLERDLAAQIARLAQAKLPAPDWLQAGQDLHDWFAQAGSEGQRDAAALALLQAFMLISGGPGTGKTTTVAKL
LALLCNQSAELPRIALAAPTGKAAAHMARALHRALGTFDAPAAVKQHLLQLQGQTVHRLLKLRAPQMRPQFNEEQPLPLD
ILIIDEASMLDIALLLQLLRAVPDGCRVVLLGDENQLPSVGAGAVLAALAQPTLLSENAAAQLQAMLPQHGFQTALSPPP
MSQNVARLVVSHRFDDQSGIGSLARAVVAEDAALAWAQFARFPEALGVWQGSRREQAEALYALHADYWQAVAGGDVAAAF
AHQADAVVLAAWRDDAAAFNEAYRQCLQRHGRARADVPWFAGQMVMIERNDYALNVFNGDIGLVLPDKENAGALAAWFAA
AEGYRSIPLSRLSAHSPAFAITVHKSQGSEYREVWLLPPSVEMPPESGAGLNKALLYTAITRARERFVFCGSQAVFQTAC
GLNAQRRSALREMMMQRFE

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=651742 LVJ78_RS05445 WP_132952409.1 1221586..1223325(+) (recD) [Uruburuella suis strain 1258/02]
ATGACTGTTCATTCAGATGCTGATTTAAACCAGGCCGCCGCCGATGCGGCCTGCTCGTTTTTGCAACACTATGCGCCCGC
AGCGGCGCCACTGGCCGTGCCTTATGTGCCGCGCCTGTTTGCCGCTTTGGCGGACGGGCATTCGTTTATTTGGCTGAGCG
CGGCAGAAGCAGCGGCTTTGGCCGAAGCGGCGCCGTTGGTGAGCCGTGGCGGCAACACGCCGCTGGTGCTGCTGGAGCGG
CGTTTGTTTTTGGGGCGCATGTGGCAGCTCGAGCGTGATTTGGCCGCCCAAATCGCGCGGTTGGCGCAAGCTAAGCTGCC
GGCGCCCGATTGGTTGCAGGCGGGGCAGGATTTGCACGATTGGTTTGCACAGGCGGGCAGCGAAGGGCAGAGGGATGCGG
CGGCGCTCGCGCTGCTGCAAGCGTTTATGCTCATCAGCGGCGGCCCCGGCACCGGCAAAACCACCACCGTGGCCAAGCTT
TTGGCGCTGCTGTGCAACCAAAGCGCCGAACTGCCGCGCATCGCGCTGGCCGCGCCCACCGGCAAAGCGGCGGCGCATAT
GGCGCGCGCGCTGCATCGGGCGCTGGGCACTTTTGATGCACCCGCTGCGGTGAAGCAGCATTTGTTGCAGCTGCAAGGCC
AAACCGTGCACCGGCTCTTAAAGTTGCGTGCGCCGCAAATGCGCCCGCAATTTAATGAAGAGCAGCCGCTGCCTTTGGAT
ATTCTGATTATTGATGAAGCTTCGATGCTGGATATTGCCTTGCTGTTGCAGCTTTTGCGTGCCGTGCCCGATGGCTGCCG
CGTGGTATTGCTCGGTGATGAAAACCAGCTGCCTTCGGTGGGCGCAGGTGCGGTGTTGGCGGCGTTGGCGCAGCCCACTT
TATTGAGTGAAAACGCGGCAGCGCAATTGCAGGCTATGTTGCCGCAACACGGTTTTCAGACGGCCTTATCGCCGCCGCCT
ATGTCGCAAAACGTGGCGCGCCTTGTGGTGAGCCACCGCTTTGATGATCAAAGCGGTATAGGCTCGCTGGCGCGCGCGGT
GGTGGCGGAAGATGCGGCGCTGGCTTGGGCGCAGTTTGCGCGCTTTCCCGAAGCGCTGGGCGTGTGGCAGGGCAGCCGCC
GCGAGCAGGCCGAGGCTTTGTATGCTTTGCACGCGGATTATTGGCAGGCGGTGGCCGGCGGCGATGTGGCAGCGGCTTTT
GCCCATCAGGCCGATGCGGTGGTGCTGGCGGCTTGGCGCGATGATGCGGCGGCGTTTAACGAGGCCTATCGGCAATGCCT
GCAACGCCACGGCCGCGCCCGTGCCGATGTGCCGTGGTTTGCCGGGCAGATGGTGATGATAGAGCGCAACGATTATGCGC
TCAATGTGTTCAACGGCGACATCGGCTTGGTGCTACCGGATAAAGAGAATGCGGGCGCACTTGCCGCCTGGTTTGCCGCA
GCCGAGGGCTACCGCAGCATTCCGCTGAGCCGCTTGAGCGCACACAGCCCGGCTTTTGCGATTACCGTGCACAAAAGCCA
AGGCTCGGAATACCGTGAAGTGTGGCTGCTGCCGCCGTCGGTGGAAATGCCGCCCGAAAGCGGCGCAGGCTTGAACAAGG
CGCTGCTCTACACCGCCATCACCCGCGCGCGCGAACGCTTTGTGTTTTGCGGCAGCCAAGCCGTGTTTCAGACGGCCTGC
GGCTTGAATGCGCAACGGCGCAGCGCTTTGCGCGAAATGATGATGCAGCGTTTTGAATGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(497-548)

AAA domain (AAA_30)

(127-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

57.549

97.237

0.56