Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   LVJ78_RS02715 Genome accession   NZ_CP091507
Coordinates   610983..614207 (-) Length   1074 a.a.
NCBI ID   WP_132953411.1    Uniprot ID   A0AAE9KHF2
Organism   Uruburuella suis strain 1258/02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 605983..619207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS02695 (LVJ78_02695) - 607279..608085 (-) 807 WP_132953403.1 DsbC family protein -
  LVJ78_RS02700 (LVJ78_02700) - 608248..609042 (+) 795 WP_132953405.1 3'-5' exonuclease -
  LVJ78_RS02705 (LVJ78_02705) - 609142..610023 (+) 882 WP_132953407.1 prephenate dehydrogenase/arogenate dehydrogenase family protein -
  LVJ78_RS02710 (LVJ78_02710) - 610272..610721 (-) 450 WP_132953409.1 TIGR01244 family sulfur transferase -
  LVJ78_RS02715 (LVJ78_02715) recC 610983..614207 (-) 3225 WP_132953411.1 exodeoxyribonuclease V subunit gamma Machinery gene
  LVJ78_RS02720 (LVJ78_02720) msrB 614418..614816 (+) 399 WP_132953413.1 peptide-methionine (R)-S-oxide reductase MsrB -
  LVJ78_RS02725 (LVJ78_02725) ampD 615218..615787 (+) 570 WP_132953415.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LVJ78_RS02730 (LVJ78_02730) - 615936..617255 (+) 1320 WP_132953417.1 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 120451.53 Da        Isoelectric Point: 5.5273

>NTDB_id=651737 LVJ78_RS02715 WP_132953411.1 610983..614207(-) (recC) [Uruburuella suis strain 1258/02]
MLYLYQSNRLENLARVFTGLQKLMPPENPLAAEEIVVQSQGMRRFLNLHLAKELGVAANLKFSLPAGLTWRLMRECLPGL
PELSPFAPEVMRWRLLDLFQSQAFQTASEYAAARAALQSYLAGGQAAAYQLSGQLADIFDQYLVYRPQWISAWQQGRLLE
LGEDEIWQAELWRFLDDGSSNAPHRVAMWQQLLAALSADKLPQRFFVFGIATMAPMYLQLLEAMAEHCDVHIFALNPSSE
YWGNVIEAAQILQSGDDIDLSQSGHPLLASLGKQGRDFFDALAEAHISEERSYFSDDAQTAPTLLQRLQHDIQTLSLPAA
KQEHAPADSSIRIHAAHSPLRELHILKDQLLALLAEHPDWQPYDIAVLTPNIEPYSPYIEAVFGQAQGGAQALPYSISDV
KLSRRQPLLHALTQTLALLESRFEVDYLLPLLENDLVLRRFALSRDDLPLLHDTIAALNVHWGLDSTMRGEFGAASSLFT
WQQALERLILGWMLPESAHPVWQNISAWHGDPNQIAVFSRFTVLIRTLADTQKRWQQPADIAAWCERVRCLLTDLFAPDS
NDQHALQQIEQALARWQAEAELAHFGGYLPQHIVIEHLQHFLSGQSQAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGD
FPRNTKAAAFDLIARHPQKGDRARRDDDRYLFLEAIISAREVLYLSYLGRNISNDEPLAPSALISELIDTLAAMSGQRSS
EWAAKHVLQHPLQAFSPRYFSADALSDGLISSRSDYAAALNQPQAQTAAFFSAPLNEAATDAVIEQENFLRFWRNPVRHW
LQHTLSWHAPYADEAWDAAEPFDPPHSSRITEAYTQARRAHQDFGQTAGRLSAESLLPEGELGHLWQQQFQAAAKSLDGE
LLASPKLPPQPYCLSLGENTLEGSLGHLHRHGQIYFLNRAPSAPDMLAYLLQHLIFCAVRPHEHPECRTHLLLPGQSQTL
ADIPQAAARAQLAQWLAYFRLGQSRPLPFFAKTGLAVAEVLSSNKADSLERAQQTARSEYRGSKKSTGQRDYIEVDLVFG
RDSTEPIDTPLFWNLLEDLPVPLLRALQTEAGEE

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=651737 LVJ78_RS02715 WP_132953411.1 610983..614207(-) (recC) [Uruburuella suis strain 1258/02]
ATGCTCTATCTTTATCAATCCAACCGCCTTGAAAACCTCGCCCGTGTGTTTACCGGGCTGCAAAAGCTGATGCCGCCTGA
AAACCCGCTGGCAGCAGAAGAAATCGTGGTGCAAAGCCAAGGCATGCGCCGCTTTTTAAACCTGCATCTGGCCAAAGAAT
TGGGCGTGGCGGCCAATTTGAAATTCAGCCTGCCCGCCGGCCTCACCTGGCGGCTGATGCGCGAATGCCTGCCCGGCCTG
CCCGAGCTGAGCCCGTTTGCGCCCGAAGTGATGCGCTGGCGGCTGCTGGATTTGTTTCAAAGCCAAGCGTTTCAGACGGC
CTCTGAATACGCAGCCGCCCGTGCCGCGTTGCAAAGCTATTTGGCCGGCGGCCAAGCGGCGGCTTACCAGCTATCGGGGC
AGCTGGCCGATATTTTCGACCAATATCTGGTTTACCGGCCGCAATGGATCAGCGCCTGGCAGCAAGGCCGTTTGCTGGAG
CTGGGTGAAGATGAAATCTGGCAGGCCGAATTGTGGCGCTTTCTTGATGACGGCAGCAGCAACGCGCCGCACCGTGTGGC
CATGTGGCAGCAGCTTTTGGCCGCATTGAGCGCCGATAAATTGCCGCAGCGCTTTTTTGTGTTCGGCATCGCCACCATGG
CGCCGATGTATTTGCAGCTTTTAGAAGCCATGGCCGAGCATTGCGATGTGCACATTTTCGCGCTCAACCCAAGCAGCGAA
TATTGGGGCAATGTGATTGAAGCGGCGCAAATCCTGCAAAGCGGCGACGACATTGATTTGAGCCAGAGCGGCCACCCGTT
GCTCGCTTCGCTGGGCAAGCAGGGGCGCGATTTCTTCGATGCGCTCGCCGAAGCGCACATCAGCGAAGAGCGCAGCTATT
TCAGCGATGACGCGCAAACCGCGCCCACTTTGCTGCAACGCTTGCAACACGATATCCAAACCCTCAGCCTGCCCGCCGCC
AAGCAGGAGCATGCACCGGCCGACAGCTCCATCCGCATTCACGCCGCCCACAGCCCTTTGCGCGAGTTGCACATTTTGAA
AGACCAATTGCTCGCGCTTTTGGCCGAGCACCCCGATTGGCAGCCGTACGATATTGCCGTGCTCACCCCCAATATCGAGC
CCTACAGCCCCTATATCGAAGCCGTGTTCGGGCAGGCGCAAGGCGGCGCGCAGGCTTTGCCCTATTCGATTTCCGACGTG
AAGCTCAGCCGCCGCCAGCCGCTTTTGCACGCTTTGACACAAACCCTCGCCTTGTTGGAAAGCCGCTTCGAAGTGGATTA
TCTGCTGCCGCTGCTGGAAAACGATTTGGTGCTGCGCCGCTTTGCCCTCAGCCGCGACGATTTGCCGCTTTTGCACGACA
CCATCGCCGCGCTCAACGTGCATTGGGGCTTAGACAGCACCATGCGTGGCGAATTCGGCGCAGCCAGCAGCCTCTTTACC
TGGCAGCAGGCGCTGGAGCGGCTGATTTTGGGCTGGATGCTGCCCGAAAGCGCGCACCCCGTGTGGCAAAACATCAGCGC
CTGGCACGGCGACCCCAACCAAATCGCCGTGTTCAGCCGCTTCACCGTACTGATCCGCACCCTTGCCGACACACAAAAGC
GCTGGCAGCAGCCGGCGGATATTGCCGCTTGGTGCGAACGCGTGCGCTGCCTGCTAACCGATTTATTTGCCCCCGACAGC
AACGACCAACACGCCTTGCAACAAATCGAGCAGGCGCTGGCACGCTGGCAGGCCGAAGCCGAATTGGCGCACTTTGGCGG
CTATCTGCCGCAACACATCGTTATCGAGCACCTGCAACACTTTCTCAGCGGCCAAAGCCAGGCCGGATTTCTGCGCGGCG
GCATCACTTTTTGCAGCATGGTGCCCATGCGCAGCCTGCCTTTTAAAGTGATTTGCCTGCTCGGCCTCAACGATGGCGAT
TTCCCGCGCAACACCAAAGCCGCCGCCTTCGACCTGATTGCCCGCCACCCGCAAAAAGGCGACCGCGCCCGCCGCGACGA
CGACCGCTATCTGTTTCTCGAAGCCATCATCAGCGCACGCGAAGTGCTTTATTTATCCTATCTCGGCCGCAACATCAGCA
ACGACGAGCCGCTTGCCCCCTCCGCCCTGATCAGCGAGCTTATCGACACGCTGGCCGCCATGAGCGGGCAGCGCAGCAGC
GAATGGGCCGCCAAGCATGTGCTGCAACACCCGCTGCAAGCTTTCTCGCCCCGCTATTTCAGCGCCGACGCCCTTTCAGA
CGGCCTCATCAGTAGCCGCAGCGATTACGCCGCCGCCCTCAACCAGCCCCAAGCCCAAACAGCCGCCTTTTTCAGCGCGC
CGCTAAACGAAGCCGCCACCGATGCCGTGATTGAGCAAGAAAACTTTCTGCGCTTCTGGCGCAACCCCGTGCGCCATTGG
CTGCAGCACACCCTCAGCTGGCACGCACCCTATGCAGACGAAGCCTGGGATGCCGCCGAGCCTTTCGACCCACCGCACAG
CAGCCGCATCACCGAAGCCTACACCCAAGCGCGGCGCGCGCACCAAGATTTCGGCCAAACCGCCGGCCGCCTGAGCGCCG
AGAGCCTGCTGCCCGAAGGCGAGCTCGGCCACTTGTGGCAGCAGCAATTCCAAGCCGCCGCCAAATCGCTCGACGGCGAA
TTATTGGCCAGCCCCAAGCTGCCGCCGCAGCCCTACTGCCTCAGCTTGGGCGAAAACACACTCGAAGGCAGCCTCGGCCA
CCTGCACCGCCACGGCCAGATTTATTTTCTCAACCGCGCACCCTCCGCGCCCGACATGCTCGCCTATTTGCTGCAACACC
TGATTTTCTGCGCCGTGCGCCCACACGAACACCCCGAATGCCGCACCCATCTGCTGCTGCCCGGCCAAAGCCAAACCCTG
GCCGACATTCCGCAGGCCGCCGCGCGTGCGCAATTGGCGCAATGGCTGGCCTATTTCCGGCTCGGCCAAAGCCGCCCGCT
GCCCTTTTTCGCCAAAACCGGCCTCGCCGTGGCCGAAGTGCTCAGCAGCAACAAAGCCGACAGCCTCGAGCGCGCACAGC
AAACCGCCCGCAGCGAATACCGGGGCAGCAAAAAAAGCACCGGCCAGCGCGACTATATCGAAGTGGATTTGGTATTCGGC
CGCGACAGCACCGAGCCGATTGACACGCCGCTGTTTTGGAACCTGCTCGAAGATTTGCCGGTGCCGCTGCTGCGAGCTTT
GCAGACAGAGGCCGGTGAAGAATAG

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-313)

RecC C-terminal domain (RecC_C)

(783-999)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

61.269

98.324

0.602