Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHB47_RS40980 Genome accession   NZ_CP108030
Coordinates   9040224..9041216 (-) Length   330 a.a.
NCBI ID   WP_327666012.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00311     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9035224..9046216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB47_RS40950 (OHB47_40970) - 9035986..9036990 (-) 1005 WP_327673265.1 NADP-dependent oxidoreductase -
  OHB47_RS40955 (OHB47_40975) - 9037135..9038190 (-) 1056 WP_327673267.1 aldo/keto reductase -
  OHB47_RS40960 (OHB47_40980) - 9038261..9038959 (-) 699 WP_327673269.1 SDR family oxidoreductase -
  OHB47_RS40965 (OHB47_40985) - 9039122..9039682 (+) 561 WP_327673271.1 TetR family transcriptional regulator -
  OHB47_RS40970 (OHB47_40990) - 9039724..9039966 (-) 243 WP_327675818.1 hypothetical protein -
  OHB47_RS40975 (OHB47_40995) - 9039996..9040184 (+) 189 Protein_8099 hypothetical protein -
  OHB47_RS40980 (OHB47_41000) cytR 9040224..9041216 (-) 993 WP_327666012.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB47_RS40985 (OHB47_41005) - 9041881..9043191 (+) 1311 WP_327673273.1 extracellular solute-binding protein -
  OHB47_RS40990 (OHB47_41010) - 9043303..9044349 (+) 1047 WP_327673275.1 sugar ABC transporter permease -
  OHB47_RS40995 (OHB47_41015) - 9044366..9045286 (+) 921 WP_327673277.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35359.06 Da        Isoelectric Point: 5.7795

>NTDB_id=651719 OHB47_RS40980 WP_327666012.1 9040224..9041216(-) (cytR) [Streptomyces sp. NBC_00311]
MKTVAARAGVGRTTVSRVVNGSELVSEKAREAVLSAIAELGYVPNSVARGLVTSRTNAVALVIPESESRLGSEPYFSAVI
RGVSAALADTRTQLQLTLVRDQAERDQLTRSVAERRVDGVLLVSVHEHDVLPGLLESAGLPTVLAGRRREDDPLSYVCAD
NRGGAASAVRHLLDRGRRRIATVAGPQDMEVGRSRLRGCQEALVEAGIPAEEHLVEVGDFTEEGARAAMRSLLERAPDLD
AVFAASDLMAAGALLELRAQGRRVPEDVSVVGFEDSYLARHTNPPLTTVRQPTEEIGGTIARTLLREIGNPAVARTRLVL
DTELVVRESS

Nucleotide


Download         Length: 993 bp        

>NTDB_id=651719 OHB47_RS40980 WP_327666012.1 9040224..9041216(-) (cytR) [Streptomyces sp. NBC_00311]
ATCAAGACCGTGGCGGCGCGGGCAGGCGTCGGGCGCACCACTGTCTCCCGTGTGGTGAACGGCTCGGAGCTGGTCAGCGA
GAAGGCGCGGGAGGCCGTACTCAGCGCCATCGCGGAACTGGGCTACGTCCCCAATTCGGTGGCCCGCGGCCTGGTCACCA
GCCGTACCAACGCCGTCGCCCTGGTCATCCCCGAGTCCGAGAGCCGGCTCGGCTCGGAGCCCTACTTCTCCGCGGTGATC
CGCGGGGTGAGCGCCGCGCTCGCCGACACGCGCACCCAGCTCCAGCTGACGCTCGTCCGCGACCAGGCCGAACGCGACCA
GCTCACCCGGTCCGTCGCCGAACGCCGGGTCGACGGCGTGCTGTTGGTCTCGGTGCACGAACACGACGTCCTGCCGGGCC
TGTTGGAGTCGGCCGGCCTGCCGACCGTCCTCGCGGGCCGCCGCCGCGAGGACGACCCGCTCAGCTACGTCTGCGCCGAC
AACCGGGGCGGGGCCGCCAGCGCCGTGCGCCACCTCCTGGACCGGGGCCGGCGCCGGATCGCCACTGTCGCGGGCCCCCA
GGACATGGAGGTCGGCCGCAGCCGGTTGCGCGGCTGCCAGGAAGCACTCGTCGAGGCGGGCATCCCGGCGGAGGAACACC
TGGTCGAGGTCGGCGACTTCACCGAGGAAGGGGCGCGCGCGGCGATGCGTTCGCTACTTGAACGTGCCCCGGACCTGGAC
GCCGTGTTCGCCGCCTCCGACCTGATGGCCGCGGGCGCCCTCCTCGAACTGCGCGCCCAGGGTCGCCGCGTACCGGAGGA
TGTCTCGGTCGTCGGATTCGAGGACTCCTACCTCGCCCGCCACACCAACCCGCCGCTCACGACGGTCCGCCAGCCCACGG
AGGAGATCGGCGGCACGATCGCCCGCACGCTCCTCCGCGAGATCGGGAACCCGGCGGTTGCGCGCACGCGGCTTGTGCTG
GATACGGAGTTGGTGGTGCGGGAGTCGTCGTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-330)

Bacterial regulatory proteins, lacI family (LacI)

(1-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.735

100

0.382
  cytR Vibrio parahaemolyticus RIMD 2210633

35.103

100

0.361