Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L3071_RS08440 Genome accession   NZ_CP091496
Coordinates   1761138..1761764 (-) Length   208 a.a.
NCBI ID   WP_023299743.1    Uniprot ID   A0A9X7L0J6
Organism   Enterobacter cloacae complex sp. ECL404     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756138..1766764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3071_RS08425 (L3071_08425) helD 1756377..1758431 (-) 2055 WP_038415790.1 DNA helicase IV -
  L3071_RS08430 (L3071_08430) - 1758554..1759000 (+) 447 WP_023299745.1 YccF domain-containing protein -
  L3071_RS08435 (L3071_08435) yccS 1759019..1761181 (+) 2163 WP_022647659.1 YccS family putative transporter -
  L3071_RS08440 (L3071_08440) sxy/tfoX 1761138..1761764 (-) 627 WP_023299743.1 TfoX/Sxy family DNA transformation protein Regulator
  L3071_RS08445 (L3071_08445) sulA 1761982..1762491 (+) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  L3071_RS08450 (L3071_08450) ompA 1762848..1763900 (+) 1053 WP_017694761.1 porin OmpA -
  L3071_RS08455 (L3071_08455) matP 1763966..1764418 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  L3071_RS08460 (L3071_08460) - 1764605..1766365 (+) 1761 WP_023305819.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.54 Da        Isoelectric Point: 9.4592

>NTDB_id=651714 L3071_RS08440 WP_023299743.1 1761138..1761764(-) (sxy/tfoX) [Enterobacter cloacae complex sp. ECL404]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=651714 L3071_RS08440 WP_023299743.1 1761138..1761764(-) (sxy/tfoX) [Enterobacter cloacae complex sp. ECL404]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCGTCCTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572