Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB47_RS13890 Genome accession   NZ_CP108030
Coordinates   3033221..3033856 (-) Length   211 a.a.
NCBI ID   WP_327664003.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00311     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3028221..3038856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB47_RS13870 (OHB47_13885) - 3028225..3028593 (-) 369 WP_327664006.1 DUF485 domain-containing protein -
  OHB47_RS13875 (OHB47_13890) - 3028864..3030420 (+) 1557 WP_327669877.1 S8 family serine peptidase -
  OHB47_RS13880 (OHB47_13895) - 3030532..3031950 (+) 1419 WP_327669878.1 CoA transferase -
  OHB47_RS13885 (OHB47_13900) - 3032117..3033127 (+) 1011 WP_327675420.1 CopD family protein -
  OHB47_RS13890 (OHB47_13905) vraR 3033221..3033856 (-) 636 WP_327664003.1 response regulator transcription factor Regulator
  OHB47_RS13895 (OHB47_13910) - 3033853..3035154 (-) 1302 WP_327669879.1 sensor histidine kinase -
  OHB47_RS13900 (OHB47_13915) - 3035390..3036166 (+) 777 WP_327669880.1 class I SAM-dependent methyltransferase -
  OHB47_RS13905 (OHB47_13920) - 3036184..3037227 (-) 1044 WP_327669881.1 zinc-dependent alcohol dehydrogenase family protein -
  OHB47_RS13910 (OHB47_13925) - 3037265..3037924 (-) 660 WP_327675422.1 lysoplasmalogenase -
  OHB47_RS13915 (OHB47_13930) - 3037939..3038823 (-) 885 WP_327669882.1 sterol desaturase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22172.59 Da        Isoelectric Point: 9.8333

>NTDB_id=651649 OHB47_RS13890 WP_327664003.1 3033221..3033856(-) (vraR) [Streptomyces sp. NBC_00311]
MSAAVRVLLCDDHAVVRAGLRALLSSTDGMEVVGEADSGERALAMAEALRPDVVLMDLQLGTGMDGVEATRRLTASGAEE
APRVLVLTMFDTDADIARAVAAGATGYLLKAERPDRLFVAIRDAAAGRTALSGAVADRVVSRLRAPGPALTEREREVLAR
LAQGLGNREIARALFLSEATVKTHLGRVYAKLGVRTRAGAVAAAARHRLLP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=651649 OHB47_RS13890 WP_327664003.1 3033221..3033856(-) (vraR) [Streptomyces sp. NBC_00311]
GTGAGCGCCGCCGTACGGGTCCTGCTCTGCGACGACCACGCCGTCGTCCGCGCCGGGCTGCGCGCCCTGCTGTCCAGCAC
CGACGGCATGGAGGTGGTCGGCGAGGCGGACAGCGGTGAGCGGGCCCTGGCGATGGCCGAGGCGCTGCGCCCCGACGTGG
TCCTCATGGACCTGCAACTCGGCACCGGCATGGACGGCGTCGAGGCCACCCGCCGGCTGACGGCGTCCGGCGCGGAGGAG
GCCCCGCGCGTGCTGGTGCTCACCATGTTCGACACCGACGCGGACATCGCCCGCGCCGTCGCCGCGGGCGCCACCGGCTA
CCTGCTCAAGGCCGAGCGCCCCGACCGGCTGTTCGTGGCGATCCGCGACGCCGCCGCCGGACGCACCGCCCTGTCGGGTG
CGGTCGCCGACCGGGTGGTGTCCCGGCTCCGCGCCCCCGGGCCCGCGCTGACCGAACGCGAACGTGAGGTGCTGGCCCGC
CTGGCCCAGGGCCTGGGAAACCGGGAGATCGCCCGTGCCCTGTTCCTCAGCGAGGCCACGGTCAAGACCCACCTGGGCCG
CGTCTACGCCAAGCTCGGGGTGCGCACCAGGGCGGGAGCCGTGGCGGCCGCGGCCCGCCACCGACTGCTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.571

99.526

0.384
  degU Bacillus subtilis subsp. subtilis str. 168

34.234

100

0.36