Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   L3V47_RS19200 Genome accession   NZ_CP091480
Coordinates   4181439..4182878 (-) Length   479 a.a.
NCBI ID   WP_099994508.1    Uniprot ID   A0AAX3VN16
Organism   Aeromonas salmonicida strain ASscau0313     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4176439..4187878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V47_RS19170 (L3V47_19135) dagF 4176712..4177452 (+) 741 WP_111588920.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  L3V47_RS19175 (L3V47_19140) - 4177556..4179460 (+) 1905 WP_277735179.1 BglG family transcription antiterminator -
  L3V47_RS19180 (L3V47_19145) npr 4179479..4179751 (-) 273 WP_005314403.1 PTS phosphocarrier protein NPr -
  L3V47_RS19185 (L3V47_19150) rapZ 4179772..4180638 (-) 867 WP_005314405.1 RNase adapter RapZ -
  L3V47_RS19190 (L3V47_19155) ptsN 4180681..4181127 (-) 447 WP_005314406.1 PTS IIA-like nitrogen regulatory protein PtsN -
  L3V47_RS19195 (L3V47_19160) hpf 4181130..4181417 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  L3V47_RS19200 (L3V47_19165) rpoN/rpoN1 4181439..4182878 (-) 1440 WP_099994508.1 RNA polymerase factor sigma-54 Machinery gene
  L3V47_RS19205 (L3V47_19170) lptB 4182944..4183669 (-) 726 WP_005314412.1 LPS export ABC transporter ATP-binding protein -
  L3V47_RS19210 (L3V47_19175) lptA 4183673..4184200 (-) 528 WP_005314414.1 lipopolysaccharide transport periplasmic protein LptA -
  L3V47_RS19215 (L3V47_19180) lptC 4184187..4184747 (-) 561 WP_277735186.1 LPS export ABC transporter periplasmic protein LptC -
  L3V47_RS19220 (L3V47_19185) kdsC 4184744..4185298 (-) 555 WP_005314419.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  L3V47_RS19225 (L3V47_19190) - 4185298..4186293 (-) 996 WP_034524103.1 KpsF/GutQ family sugar-phosphate isomerase -
  L3V47_RS19230 (L3V47_19195) mlaF 4186501..4187301 (+) 801 WP_011898278.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53877.82 Da        Isoelectric Point: 4.3484

>NTDB_id=651639 L3V47_RS19200 WP_099994508.1 4181439..4182878(-) (rpoN/rpoN1) [Aeromonas salmonicida strain ASscau0313]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEVQETSPEEPVDDSQLDSSDAMAQDQMP
DELPVDTTWEDVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDDSGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYAPELPWLNEAREVIKEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQQLEPRPGNGIIQSDSQYVIPDVTVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVATCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=651639 L3V47_RS19200 WP_099994508.1 4181439..4182878(-) (rpoN/rpoN1) [Aeromonas salmonicida strain ASscau0313]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAACAATCCTTTGCTTGAGCAAGAGGAGAATGAGG
TTCAGGAGACCAGCCCGGAAGAGCCCGTCGACGACAGCCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAACTGCCGGTAGATACCACCTGGGAAGATGTCTATTCAGCCGGCACAGCCCAGAGCGCAGGCCCCATCCACGATGG
GGAAGACAGCGTCTATCAGGGGGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATCTGGATGCTGCCATTGCGCTGGCTATCATAGATGCCATTGATGACTCCGGTTATCTGACCGTCTCTCTCGAAGAT
ATACAGGCGGCAGTGAGCAGCGAGGATGTCGAGGTGGAGCTCGACGAGGTCGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATAGCCGCGCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTCGGCCAGTACGCTCCTGAACTGCCCT
GGCTCAATGAGGCCAGGGAGGTGATCAAGGAGCACATGGATCTGCTCGGCAACCGTGATTACCGCACCCTGGCACGCAAG
ACCAAGCTCAAGGAGAGTGACCTCAAGGAGGTGCTGGACCTTATCCAGCAACTGGAGCCCAGGCCGGGTAACGGCATCAT
ACAGAGTGACTCCCAGTACGTGATCCCGGATGTCACCGTCGTCAAGAAGGGCAACAAATGGGTCGTCGAGCTCAACCCTG
ATTCTGCACCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGTCAGGCGCGTACCAGCCAGGATACCCAGTTC
ATTCGCTCCCACTTGCAAGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCGAC
CTGTATTGTCGAGCAACAACAGGGCTTTTTCGAGTATGGTGAAGAAGCCATGAAGCCCATGGTGCTCAACGATATCGCCG
AGGCGGTGGAGATGCATGAGTCGACCATTTCCAGGGTAACGACCCAGAAATACATGCATACCCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTGAACACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTGATCAA
GAAGCTGGTGACGGCAGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.972

100

0.489