Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   L2I54_RS26185 Genome accession   NZ_CP091476
Coordinates   5071058..5072407 (-) Length   449 a.a.
NCBI ID   WP_061457876.1    Uniprot ID   -
Organism   Bacillus cereus strain GSICC 30237     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5066058..5077407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I54_RS26150 (L2I54_26075) - 5066221..5066916 (-) 696 WP_000466505.1 hypothetical protein -
  L2I54_RS26155 (L2I54_26080) - 5066903..5067691 (-) 789 WP_000120052.1 hypothetical protein -
  L2I54_RS26160 (L2I54_26085) - 5067723..5068292 (-) 570 WP_061457874.1 hypothetical protein -
  L2I54_RS26165 (L2I54_26090) - 5068410..5068892 (-) 483 WP_000023374.1 hypothetical protein -
  L2I54_RS26170 (L2I54_26095) raiA 5069165..5069707 (-) 543 WP_000671185.1 ribosome-associated translation inhibitor RaiA -
  L2I54_RS26175 (L2I54_26100) cspC 5070030..5070227 (-) 198 WP_001990088.1 cold shock protein CspC -
  L2I54_RS26180 (L2I54_26105) - 5070354..5071058 (-) 705 WP_080447024.1 ComF family protein -
  L2I54_RS26185 (L2I54_26110) comFA 5071058..5072407 (-) 1350 WP_061457876.1 ATP-dependent helicase ComFA Machinery gene
  L2I54_RS26190 (L2I54_26115) - 5072535..5073956 (-) 1422 WP_061457877.1 C40 family peptidase -
  L2I54_RS26195 (L2I54_26120) - 5074105..5074419 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  L2I54_RS26200 (L2I54_26125) - 5074592..5075434 (-) 843 WP_025921785.1 DegV family protein -
  L2I54_RS26205 (L2I54_26130) - 5075671..5076306 (+) 636 WP_088338275.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51102.87 Da        Isoelectric Point: 9.9041

>NTDB_id=651611 L2I54_RS26185 WP_061457876.1 5071058..5072407(-) (comFA) [Bacillus cereus strain GSICC 30237]
MVAGKQLLLEELSSDLQRKLNDLKKKGEVVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECTVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVIVVDEIDAFPYCADQMLQYAVKQAM
KEEAARIYLTATPDEAWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLNRERIPRVLLQWLKMYLNKKYPVFL
FVPHVRYIEEISSLLKSLHNKVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=651611 L2I54_RS26185 WP_061457876.1 5071058..5072407(-) (comFA) [Bacillus cereus strain GSICC 30237]
ATGGTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGAAATTAAACGATTTGAAAAAGAAGGG
AGAGGTCGTGTGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGTGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCAGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGGGCATTTC
ATGTCATAGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAGAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAGCGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCGTTGCCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCAACCGTGAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGTACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATGTACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCATAATAAAGTTGAAGGGGTACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCGTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCATATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.392

93.096

0.488
  comFA Latilactobacillus sakei subsp. sakei 23K

40.704

88.641

0.361