Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SPYJRS4_RS00690 | Genome accession | NZ_AP012335 |
| Coordinates | 107814..108767 (+) | Length | 317 a.a. |
| NCBI ID | WP_021340467.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes JRS4 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 102814..113767
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPYJRS4_RS00650 (SPYJRS4_0092) | - | 103641..104006 (+) | 366 | WP_002986560.1 | DUF1033 family protein | - |
| SPYJRS4_RS00655 (SPYJRS4_0093) | comYA | 104099..105037 (+) | 939 | WP_002986557.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SPYJRS4_RS00660 (SPYJRS4_0094) | comYB | 104973..106007 (+) | 1035 | WP_011184088.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SPYJRS4_RS00665 (SPYJRS4_0095) | comYC | 106009..106335 (+) | 327 | WP_002986552.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SPYJRS4_RS00670 (SPYJRS4_0096) | comGD | 106310..106738 (+) | 429 | WP_011184089.1 | competence type IV pilus minor pilin ComGD | - |
| SPYJRS4_RS00675 (SPYJRS4_0097) | comGE | 106695..106979 (+) | 285 | WP_027968839.1 | competence type IV pilus minor pilin ComGE | - |
| SPYJRS4_RS00680 (SPYJRS4_0098) | comYF | 106972..107406 (+) | 435 | WP_002986542.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SPYJRS4_RS00685 (SPYJRS4_0099) | comGG | 107390..107716 (+) | 327 | WP_002986539.1 | competence type IV pilus minor pilin ComGG | - |
| SPYJRS4_RS00690 (SPYJRS4_0100) | comYH | 107814..108767 (+) | 954 | WP_021340467.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SPYJRS4_RS00695 (SPYJRS4_0101) | - | 108826..110022 (+) | 1197 | WP_002986533.1 | acetate kinase | - |
| SPYJRS4_RS00700 (SPYJRS4_0102) | - | 110209..110517 (+) | 309 | WP_011017251.1 | hypothetical protein | - |
| SPYJRS4_RS00705 (SPYJRS4_0103) | proC | 110600..111370 (-) | 771 | WP_011184092.1 | pyrroline-5-carboxylate reductase | - |
| SPYJRS4_RS00710 (SPYJRS4_0104) | pepA | 111418..112485 (-) | 1068 | WP_011184093.1 | glutamyl aminopeptidase | - |
| SPYJRS4_RS00715 (SPYJRS4_0106) | - | 112950..113234 (+) | 285 | WP_011888537.1 | DUF4651 domain-containing protein | - |
| SPYJRS4_RS00720 (SPYJRS4_0107) | - | 113231..113548 (+) | 318 | WP_002986515.1 | thioredoxin family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35971.05 Da Isoelectric Point: 4.7205
>NTDB_id=65160 SPYJRS4_RS00690 WP_021340467.1 107814..108767(+) (comYH) [Streptococcus pyogenes JRS4]
MTFEKIEEAYQLLLENCQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNSDKLKALCLTKEEWRKAYQFLFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSS
AHFVQEDAVRPQLLKESDIVISDLPVGYYPNDDIAKRYKVASSDKHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSPQ
SQLLKQWLKDYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPMETFVYPIRDLKLAENIHDFMENFKKWKLSNVN
MTFEKIEEAYQLLLENCQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNSDKLKALCLTKEEWRKAYQFLFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSS
AHFVQEDAVRPQLLKESDIVISDLPVGYYPNDDIAKRYKVASSDKHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSPQ
SQLLKQWLKDYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPMETFVYPIRDLKLAENIHDFMENFKKWKLSNVN
Nucleotide
Download Length: 954 bp
>NTDB_id=65160 SPYJRS4_RS00690 WP_021340467.1 107814..108767(+) (comYH) [Streptococcus pyogenes JRS4]
ATGACTTTTGAAAAAATTGAAGAAGCTTATCAGCTGCTCTTAGAGAATTGTCAACTAATTGAAAATGATCTAAAAACACA
TATATACGATGCCATTGTTGAACAAAACTCCTTTTATTTAGGGGCTGAGGGAGCTAGTCCTCAAGTTGCTCAAAATAGTG
ATAAACTGAAAGCCTTGTGCCTGACAAAAGAAGAATGGCGTAAGGCCTACCAGTTTCTTTTTATTAAGGCAGCTCAGACT
GAGCAACTCCAAGCCAACCATCAGTTCACACCAGATGCTATTGGCTTCATTCTGCTGTATCTTTTGGAACAATTGAGTGA
TAAAGATAGCTTAGAGGTACTTGAGATTGGAAGTGGAACAGGGAACCTAGCCCAAACCCTTCTCAACAACACGAGCAAGA
GCCTTGATTATGTAGGGATTGAACTTGATGATCTCTTGATTGATCTGTCAGCCAGTATTGCTGAGATAATGGATTCTTCA
GCCCATTTTGTTCAAGAAGATGCGGTAAGGCCTCAATTACTAAAAGAAAGTGACATTGTCATCAGTGACTTACCAGTTGG
TTATTATCCTAACGATGATATTGCCAAACGGTACAAGGTGGCTAGTTCAGATAAGCATACCTATGCCCATCATTTATTAA
TGGAACAGTCTTTAAAATACTTGAAAAAAGACGGTTTTGCGATTTTTCTGGCACCAGTCAATTTATTGACGAGCCCTCAG
AGCCAGTTATTGAAACAGTGGTTAAAAGATTATGCTCAGGTGGTGGCCTTGATTACGCTACCAGATTCTATTTTTGGTCA
TCCCTCTAATGCTAAGTCCATTATTGTCTTACAAAAACAAACAGACCACCCAATGGAAACCTTTGTCTATCCAATTCGGG
ATTTGAAGCTTGCAGAGAATATTCATGATTTTATGGAAAATTTCAAAAAATGGAAACTGAGTAATGTCAATTAA
ATGACTTTTGAAAAAATTGAAGAAGCTTATCAGCTGCTCTTAGAGAATTGTCAACTAATTGAAAATGATCTAAAAACACA
TATATACGATGCCATTGTTGAACAAAACTCCTTTTATTTAGGGGCTGAGGGAGCTAGTCCTCAAGTTGCTCAAAATAGTG
ATAAACTGAAAGCCTTGTGCCTGACAAAAGAAGAATGGCGTAAGGCCTACCAGTTTCTTTTTATTAAGGCAGCTCAGACT
GAGCAACTCCAAGCCAACCATCAGTTCACACCAGATGCTATTGGCTTCATTCTGCTGTATCTTTTGGAACAATTGAGTGA
TAAAGATAGCTTAGAGGTACTTGAGATTGGAAGTGGAACAGGGAACCTAGCCCAAACCCTTCTCAACAACACGAGCAAGA
GCCTTGATTATGTAGGGATTGAACTTGATGATCTCTTGATTGATCTGTCAGCCAGTATTGCTGAGATAATGGATTCTTCA
GCCCATTTTGTTCAAGAAGATGCGGTAAGGCCTCAATTACTAAAAGAAAGTGACATTGTCATCAGTGACTTACCAGTTGG
TTATTATCCTAACGATGATATTGCCAAACGGTACAAGGTGGCTAGTTCAGATAAGCATACCTATGCCCATCATTTATTAA
TGGAACAGTCTTTAAAATACTTGAAAAAAGACGGTTTTGCGATTTTTCTGGCACCAGTCAATTTATTGACGAGCCCTCAG
AGCCAGTTATTGAAACAGTGGTTAAAAGATTATGCTCAGGTGGTGGCCTTGATTACGCTACCAGATTCTATTTTTGGTCA
TCCCTCTAATGCTAAGTCCATTATTGTCTTACAAAAACAAACAGACCACCCAATGGAAACCTTTGTCTATCCAATTCGGG
ATTTGAAGCTTGCAGAGAATATTCATGATTTTATGGAAAATTTCAAAAAATGGAAACTGAGTAATGTCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
66.456 |
99.685 |
0.662 |
| comYH | Streptococcus mutans UA140 |
66.139 |
99.685 |
0.659 |