Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L2I54_RS09910 Genome accession   NZ_CP091476
Coordinates   1928095..1928382 (+) Length   95 a.a.
NCBI ID   WP_061457084.1    Uniprot ID   -
Organism   Bacillus cereus strain GSICC 30237     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1923095..1933382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I54_RS09890 (L2I54_09855) - 1924269..1924466 (+) 198 WP_017673210.1 DUF4083 domain-containing protein -
  L2I54_RS09895 (L2I54_09860) - 1924498..1924959 (+) 462 WP_000024999.1 NUDIX hydrolase -
  L2I54_RS09900 (L2I54_09865) nadE 1925009..1925827 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  L2I54_RS09905 (L2I54_09870) - 1926098..1927978 (+) 1881 WP_017673209.1 ABC transporter permease -
  L2I54_RS09910 (L2I54_09875) abrB 1928095..1928382 (+) 288 WP_061457084.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L2I54_RS09915 (L2I54_09880) - 1928658..1929605 (+) 948 WP_000099760.1 serine protease -
  L2I54_RS09920 (L2I54_09885) - 1929647..1929955 (-) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  L2I54_RS09925 (L2I54_09890) - 1930062..1930997 (+) 936 WP_000877965.1 aldo/keto reductase -
  L2I54_RS09930 (L2I54_09895) - 1931045..1932220 (+) 1176 WP_001082495.1 MFS transporter -
  L2I54_RS28315 - 1932269..1932475 (+) 207 WP_017673205.1 hypothetical protein -
  L2I54_RS09935 (L2I54_09900) - 1932619..1932981 (+) 363 WP_001198796.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10515.25 Da        Isoelectric Point: 5.1367

>NTDB_id=651587 L2I54_RS09910 WP_061457084.1 1928095..1928382(+) (abrB) [Bacillus cereus strain GSICC 30237]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIGKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=651587 L2I54_RS09910 WP_061457084.1 1928095..1928382(+) (abrB) [Bacillus cereus strain GSICC 30237]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGGAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(53-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.977

90.526

0.516