Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   L2I54_RS07885 Genome accession   NZ_CP091476
Coordinates   1513827..1514429 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus cereus strain GSICC 30237     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1508827..1519429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I54_RS07865 (L2I54_07840) dnaD 1509148..1509855 (+) 708 WP_000728552.1 DNA replication protein DnaD -
  L2I54_RS07870 (L2I54_07845) nth 1509871..1510518 (+) 648 WP_000933034.1 endonuclease III -
  L2I54_RS07875 (L2I54_07850) - 1510522..1511040 (+) 519 WP_000442652.1 YpoC family protein -
  L2I54_RS07880 (L2I54_07855) - 1511067..1513760 (-) 2694 WP_001283091.1 PBP1A family penicillin-binding protein -
  L2I54_RS07885 (L2I54_07860) recU 1513827..1514429 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  L2I54_RS07890 (L2I54_07865) - 1514533..1515558 (+) 1026 WP_000495658.1 DUF2515 domain-containing protein -
  L2I54_RS28310 - 1515710..1515889 (-) 180 WP_001987054.1 hypothetical protein -
  L2I54_RS07895 (L2I54_07870) - 1515975..1516217 (+) 243 WP_001252036.1 hypothetical protein -
  L2I54_RS07900 (L2I54_07875) - 1516233..1516577 (+) 345 WP_017673007.1 YppE family protein -
  L2I54_RS07905 (L2I54_07880) - 1516604..1516795 (-) 192 WP_000242652.1 YppF family protein -
  L2I54_RS07910 (L2I54_07885) - 1516973..1517539 (+) 567 WP_000487608.1 YppG family protein -
  L2I54_RS07915 (L2I54_07890) - 1517695..1518099 (+) 405 WP_000546271.1 CotD family spore coat protein -
  L2I54_RS07920 (L2I54_07895) - 1518156..1518710 (+) 555 WP_000862908.1 DUF1273 domain-containing protein -
  L2I54_RS07925 (L2I54_07900) gpsB 1518808..1519143 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=651586 L2I54_RS07885 WP_000155598.1 1513827..1514429(-) (recU) [Bacillus cereus strain GSICC 30237]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=651586 L2I54_RS07885 WP_000155598.1 1513827..1514429(-) (recU) [Bacillus cereus strain GSICC 30237]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCAATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635