Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   L2I54_RS06550 Genome accession   NZ_CP091476
Coordinates   1268659..1268982 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain GSICC 30237     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263659..1273982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I54_RS06525 (L2I54_06500) - 1263970..1265256 (+) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -
  L2I54_RS06530 (L2I54_06505) - 1265447..1266016 (+) 570 WP_017672842.1 signal peptidase I -
  L2I54_RS06535 (L2I54_06510) - 1266077..1266664 (+) 588 WP_000172852.1 CalY family protein -
  L2I54_RS06540 (L2I54_06515) - 1266784..1267605 (+) 822 WP_080446915.1 DUF4047 domain-containing protein -
  L2I54_RS06545 (L2I54_06520) calY 1267993..1268586 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  L2I54_RS06550 (L2I54_06525) sinR 1268659..1268982 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  L2I54_RS06555 (L2I54_06530) - 1269062..1269196 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  L2I54_RS06560 (L2I54_06535) inhA1 1269539..1271929 (+) 2391 WP_017672843.1 M6 family metalloprotease immune inhibitor InhA1 -
  L2I54_RS06565 (L2I54_06540) - 1272101..1273468 (+) 1368 WP_017672844.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=651584 L2I54_RS06550 WP_000578885.1 1268659..1268982(-) (sinR) [Bacillus cereus strain GSICC 30237]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=651584 L2I54_RS06550 WP_000578885.1 1268659..1268982(-) (sinR) [Bacillus cereus strain GSICC 30237]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692