Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG878_RS11375 Genome accession   NZ_CP108023
Coordinates   2573530..2574324 (+) Length   264 a.a.
NCBI ID   WP_093898912.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00316     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2568530..2579324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG878_RS11360 (OG878_11385) - 2568711..2569247 (+) 537 WP_328886674.1 TerD family protein -
  OG878_RS11365 (OG878_11390) - 2569411..2572314 (-) 2904 WP_328886675.1 vitamin B12-dependent ribonucleotide reductase -
  OG878_RS11370 (OG878_11395) nrdR 2572475..2572987 (-) 513 WP_277328761.1 transcriptional regulator NrdR -
  OG878_RS11375 (OG878_11400) dinR/lexA 2573530..2574324 (+) 795 WP_093898912.1 transcriptional repressor LexA Regulator
  OG878_RS11380 (OG878_11405) - 2574462..2576432 (-) 1971 WP_328886676.1 ATP-dependent DNA helicase -
  OG878_RS11385 (OG878_11410) - 2576471..2578402 (-) 1932 WP_328886677.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28624.36 Da        Isoelectric Point: 6.9854

>NTDB_id=651572 OG878_RS11375 WP_093898912.1 2573530..2574324(+) (dinR/lexA) [Streptomyces sp. NBC_00316]
MTTTADSATITAQDRSQSRLEPVHAMNDSVTNTEGPEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=651572 OG878_RS11375 WP_093898912.1 2573530..2574324(+) (dinR/lexA) [Streptomyces sp. NBC_00316]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGACCAGAGCCGGTGCGCCCAGCGCGCTCGCTCCCTGGTCGACCTCCAGGAATCCGTG
CGGACAGCTCGGGGCTCACAGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGACTCCGTGCAGCGTCGGGGATACCCG
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGTACGTCATCCGTAGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCCCACCGCCCCCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCTCGCAGCCCA
CCGACACGACGGGCAAGCCCGCCGCTTCGTACGTGCCACTGGTCGGCCGGATCGCAGCCGGCGGCCCGATCCTCGCCGAG
GAATCCGTCGAGGACGTCTTCCCTCTCCCCCGCCAGCTGGTCGGGGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCCATCTGTGACGGGGACTGGGTCACCGTGCGCCGTCAGCCCGTCGCGGAGAACGGTGACATCG
TGGCCGCGATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGTCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375