Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG878_RS02955 Genome accession   NZ_CP108023
Coordinates   653249..654265 (-) Length   338 a.a.
NCBI ID   WP_328885276.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00316     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 648249..659265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG878_RS02935 (OG878_02940) rbsD 648436..648825 (-) 390 WP_328885272.1 D-ribose pyranase -
  OG878_RS02940 (OG878_02945) - 648822..649727 (-) 906 WP_328885273.1 ribokinase -
  OG878_RS02945 (OG878_02950) - 649766..651718 (-) 1953 WP_328885274.1 substrate-binding domain-containing protein -
  OG878_RS02950 (OG878_02955) - 651708..653252 (-) 1545 WP_328885275.1 sugar ABC transporter ATP-binding protein -
  OG878_RS02955 (OG878_02960) cytR 653249..654265 (-) 1017 WP_328885276.1 LacI family DNA-binding transcriptional regulator Regulator
  OG878_RS02960 (OG878_02965) - 654598..654960 (+) 363 WP_328885277.1 DUF779 domain-containing protein -
  OG878_RS02965 (OG878_02970) - 655148..655342 (-) 195 WP_328885278.1 hypothetical protein -
  OG878_RS02970 (OG878_02975) - 655477..656367 (-) 891 WP_328885279.1 phosphatidylinositol-specific phospholipase C/glycerophosphodiester phosphodiesterase family protein -
  OG878_RS02975 (OG878_02980) - 656626..657747 (-) 1122 WP_328885280.1 acyl-CoA dehydrogenase family protein -
  OG878_RS02980 (OG878_02985) - 657744..658937 (-) 1194 WP_328885281.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 35958.88 Da        Isoelectric Point: 6.6120

>NTDB_id=651555 OG878_RS02955 WP_328885276.1 653249..654265(-) (cytR) [Streptomyces sp. NBC_00316]
MASIKDVAAEAGVSVATVSRVLNSHPSVSPDARARVLAAVDTLGYRPNAVARSLRTDQTRTLGLIISDVLNPYFTALARS
VEEAARALGYSVIIGNADERPELQDHHVRTLLDRRIDGLLVSPTDGGSPQILDAARGGTPMVFVDRWIPGVDVPVVRADG
CPAVRDLVAHLYRLGHRRLAIIAGPAATTTGSERVEAFRDALGRHGLALADAYIGQGDFQADSGRRATERFLALPEPPDA
VFAADNLMALGALDAIRARGLRVPQDIALAAFDDIPWFVHTDPPITAIAQPTGDLGRAAVRALVDVIEGRPPQSVTLPAR
LVVRRSCGEPASDQRSNL

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=651555 OG878_RS02955 WP_328885276.1 653249..654265(-) (cytR) [Streptomyces sp. NBC_00316]
GTGGCGAGCATCAAAGATGTCGCAGCCGAGGCGGGCGTGTCCGTCGCCACGGTCTCACGTGTCCTCAACAGCCATCCGTC
TGTCAGCCCCGACGCGAGGGCGCGCGTCCTCGCCGCTGTCGACACGCTCGGCTACCGGCCCAACGCCGTCGCCCGGTCGC
TGCGCACCGACCAGACGCGCACCCTCGGGCTGATCATCAGCGACGTGCTCAACCCGTACTTCACCGCGCTGGCCCGCTCC
GTCGAGGAAGCGGCGCGCGCCCTCGGGTACAGCGTCATCATCGGAAACGCCGACGAACGGCCCGAGCTGCAGGACCACCA
CGTCCGTACGCTCCTCGACCGCCGGATCGACGGGCTCCTCGTCTCGCCCACCGACGGCGGCTCCCCGCAGATACTCGACG
CCGCGCGCGGTGGTACCCCCATGGTCTTCGTGGACCGCTGGATTCCCGGGGTGGACGTTCCGGTGGTACGCGCCGACGGC
TGTCCAGCCGTGCGGGACCTCGTCGCCCATCTGTACCGCCTCGGCCACCGCAGGCTGGCGATCATCGCCGGCCCGGCCGC
CACCACCACCGGCAGCGAGCGCGTCGAGGCGTTCCGCGACGCCCTGGGCCGGCACGGACTCGCGCTGGCCGACGCCTACA
TCGGTCAGGGCGACTTCCAGGCGGACAGCGGGCGCCGTGCCACCGAGCGGTTCCTGGCCCTGCCCGAGCCGCCGGACGCG
GTCTTCGCCGCCGACAACCTGATGGCCCTCGGCGCACTGGACGCGATCCGCGCGCGCGGGCTGCGGGTTCCGCAGGACAT
CGCGCTCGCCGCGTTCGACGACATCCCGTGGTTCGTCCACACCGATCCGCCGATCACGGCGATCGCCCAGCCGACCGGGG
ACCTCGGCCGAGCCGCCGTACGGGCGCTGGTCGACGTCATAGAGGGCCGGCCCCCGCAGTCCGTCACCCTTCCCGCCCGT
CTCGTCGTACGCAGGTCGTGCGGCGAGCCCGCTTCGGACCAGAGGAGCAACCTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.095

100

0.361