Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG905_RS27395 Genome accession   NZ_CP108019
Coordinates   5998880..6000613 (-) Length   577 a.a.
NCBI ID   WP_328677955.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5993880..6005613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS27385 (OG905_27410) - 5995676..5996820 (+) 1145 Protein_5410 RNA polymerase sigma factor -
  OG905_RS27390 (OG905_27415) rcrQ 5996961..5998883 (-) 1923 WP_328677953.1 ABC transporter ATP-binding protein Regulator
  OG905_RS27395 (OG905_27420) rcrP 5998880..6000613 (-) 1734 WP_328677955.1 ABC transporter ATP-binding protein Regulator
  OG905_RS27400 (OG905_27425) - 6000705..6002150 (-) 1446 WP_328677958.1 FGGY family carbohydrate kinase -
  OG905_RS27405 (OG905_27430) - 6002187..6002486 (-) 300 WP_328677959.1 YtxH domain-containing protein -
  OG905_RS27425 (OG905_27450) - 6003820..6005460 (-) 1641 WP_328677961.1 VCBS repeat-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62649.71 Da        Isoelectric Point: 5.2616

>NTDB_id=651535 OG905_RS27395 WP_328677955.1 5998880..6000613(-) (rcrP) [Streptomyces sp. NBC_00322]
MLIRLLRTHLGPYRQPITLLVVLQLLQTSATLYLPTLNADIIDNGVVRGDTGYILRLGALMIAVSIVQVLCNIGAVYIGA
QTAAALGRDVRAAVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEAGRFRGANNELTDVSLSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRVDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVIP
PIKAVRELRSHGHLEVRDVEFRYPGAEESVLRDVTLLARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
DLDPALMAKTVGLVPQRPYLFSGTVATNLRYGKPDASDEELWQALEVAQAADFVRELEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALARETSEATVVIVAQRVSTIRDADRIVVLDEGQVVGTGSHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=651535 OG905_RS27395 WP_328677955.1 5998880..6000613(-) (rcrP) [Streptomyces sp. NBC_00322]
GTGCTGATACGACTACTGCGGACGCATTTGGGTCCGTACAGACAACCGATCACCCTCCTTGTGGTGCTGCAGCTGCTGCA
GACCAGCGCCACCCTTTATCTGCCGACCCTGAACGCCGACATCATTGACAACGGTGTTGTGAGGGGGGACACGGGCTACA
TCCTGCGGCTCGGCGCGCTCATGATCGCGGTGAGCATCGTCCAGGTGCTCTGCAACATCGGAGCTGTCTATATCGGCGCG
CAGACCGCCGCCGCGCTCGGGCGTGACGTCCGGGCCGCTGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGGGAGGTCGG
CCGCTTCGGGGCACCCTCTCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGGCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTGGGCCAGGATGTGCCGCTGTCGGCGGTC
CTGCTCGCGGTGGTGCCGGTGCTGGGTATCGCCGTCTCGCTGATCGTCAAGAAGATGCGCCCGCTGTTCCGGACCATGCA
GGAGCGTCTGGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTACGCGACG
AGTACGAGGCCGGGCGCTTCCGCGGCGCCAACAACGAGCTGACCGATGTGTCCCTGTCCACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCCATCGCCGTCGTCTGGTTCGGCGCACACCGGGTCGACAGCGG
CGCGATCCAGATCGGCGCCCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGGATCGAGGAGGTGCTGGACACTCGCTCGAGTGTGATCCCG
CCGATCAAGGCCGTACGGGAGCTGCGCAGTCACGGGCATCTGGAGGTGCGGGACGTGGAGTTCCGCTATCCGGGTGCCGA
GGAGTCGGTGCTGCGCGATGTCACCCTGCTGGCGCGGCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGAA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGGGAGGTGCTCGTCGACGGCGTGGATGTGCGT
GACCTCGATCCGGCGCTGATGGCGAAGACGGTGGGGCTCGTGCCCCAGAGGCCGTATCTCTTCTCCGGGACCGTTGCCAC
CAATCTGCGCTACGGGAAGCCCGACGCGAGTGACGAGGAACTGTGGCAGGCGCTGGAAGTGGCGCAGGCGGCCGACTTCG
TACGAGAACTCGAAGGCGGGCTGAACGCGCCGATAGCGCAGGGCGGCACCAATGTCTCCGGCGGCCAGCGCCAGCGCCTC
GCGATCGCGCGGACCCTGGTGCAGCGTCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCCACGGA
CGCGGCGCTGCGAGGCGCGCTCGCCCGGGAGACCTCCGAGGCGACGGTCGTGATAGTCGCGCAGCGGGTGTCCACCATCC
GTGACGCCGACCGCATCGTGGTCCTGGACGAGGGGCAGGTCGTGGGGACCGGAAGCCATCACGAGCTGATGGAGAGCAAT
GAGACCTACCGAGAGATCGTGCTCTCGCAGCTGACGGAGGCTGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.621

94.107

0.392