Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG905_RS27390 Genome accession   NZ_CP108019
Coordinates   5996961..5998883 (-) Length   640 a.a.
NCBI ID   WP_328677953.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5991961..6003883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS27375 (OG905_27400) - 5992258..5993520 (+) 1263 WP_328677951.1 FAD-dependent oxidoreductase -
  OG905_RS27380 (OG905_27405) dnaG 5993556..5995460 (+) 1905 WP_328677952.1 DNA primase -
  OG905_RS27385 (OG905_27410) - 5995676..5996820 (+) 1145 Protein_5410 RNA polymerase sigma factor -
  OG905_RS27390 (OG905_27415) rcrQ 5996961..5998883 (-) 1923 WP_328677953.1 ABC transporter ATP-binding protein Regulator
  OG905_RS27395 (OG905_27420) rcrP 5998880..6000613 (-) 1734 WP_328677955.1 ABC transporter ATP-binding protein Regulator
  OG905_RS27400 (OG905_27425) - 6000705..6002150 (-) 1446 WP_328677958.1 FGGY family carbohydrate kinase -
  OG905_RS27405 (OG905_27430) - 6002187..6002486 (-) 300 WP_328677959.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69357.65 Da        Isoelectric Point: 5.1280

>NTDB_id=651534 OG905_RS27390 WP_328677953.1 5996961..5998883(-) (rcrQ) [Streptomyces sp. NBC_00322]
MSGPGGRMMMGPVERSMDFKGSGKRLLRQLAPERMTLWVMLAAAVLSVAFNVVGPWILGRATDLVFAGVVGREMDAGTSK
EQAIDGLRDKGQGGLADLLSGVDFTPGDGIDFTAVGHVLLTALAVYVAAGLLMLVATRLSIRVINRTLYRMREDVQAKLS
RLPLSYFDRAKRGEVLSRATNDIDNISQTLQQTMGQLINSLLTIVGVLAMMCWISPLLALVALVTVPVSVVVATRVGKRS
QPHFVQQWKTTGKLNAHIEEMYTGHALVKVFGRQDESARDFAEQNEALYEAGFKAQFNSGVMQPLMFFVSNLNYVLVAVV
GGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADAPSAERPEHPQGRVSLEKV
AFRYDPDKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRISLDGVDVAKMSREELRSQIGMVLQDTWL
FGGTIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGAIVEQGTHEELLAAQGAYARLYAAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=651534 OG905_RS27390 WP_328677953.1 5996961..5998883(-) (rcrQ) [Streptomyces sp. NBC_00322]
ATGAGCGGGCCGGGCGGACGGATGATGATGGGCCCCGTCGAGCGGTCCATGGACTTCAAGGGTTCGGGCAAACGGCTGCT
GCGGCAGCTCGCGCCGGAGCGTATGACGCTGTGGGTGATGCTCGCGGCGGCTGTGCTGAGCGTCGCGTTCAACGTGGTCG
GCCCGTGGATTCTGGGCCGGGCGACCGACCTGGTCTTCGCCGGGGTCGTCGGCCGTGAGATGGACGCGGGGACCAGCAAG
GAACAGGCGATCGACGGCCTGCGCGACAAGGGCCAGGGCGGGCTCGCGGACCTGCTGTCCGGCGTGGACTTCACGCCCGG
CGACGGCATCGACTTCACCGCCGTCGGCCATGTGCTGCTGACGGCGCTCGCGGTGTACGTGGCCGCCGGTCTGCTGATGC
TGGTGGCGACCCGGCTGTCGATCCGGGTGATCAACCGGACCCTGTACCGGATGCGCGAGGACGTACAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACATCTC
GCAGACCCTGCAACAGACGATGGGCCAGCTGATCAACTCGCTGCTGACCATCGTTGGCGTGCTGGCGATGATGTGCTGGA
TCTCGCCGCTGCTCGCGCTGGTGGCACTGGTGACGGTGCCGGTGTCGGTCGTCGTCGCGACGAGGGTCGGCAAGCGGTCG
CAGCCGCACTTCGTGCAGCAGTGGAAGACCACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGTCATGCGCT
GGTGAAGGTCTTCGGGCGGCAGGACGAGTCCGCCAGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCGGGATTCA
AGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGTTCTTCGTCTCGAACCTCAACTATGTGCTGGTGGCCGTGGTC
GGCGGGCTGCGGGTCGCCTCCGGCGCGCTGTCGATCGGCGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCGGGCGTCGCGTCCGCCGAGCGGATCTTCGAACTCCTCG
ACGCGGAGGAGCAGGAGGCGGACGCGCCGTCCGCCGAGCGGCCCGAACACCCGCAGGGCCGGGTTTCCCTGGAGAAGGTC
GCCTTCCGCTACGACCCGGACAAGCCGCTCATCGAGGATCTGTCGCTGAGCGTGGAGCCGGGTCACACGGTCGCGATCGT
CGGCCCGACGGGCGCGGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGAGGTCACCGGCGGCCGGATCAGCC
TCGACGGGGTCGACGTCGCCAAGATGTCCCGCGAGGAACTGCGGTCCCAGATTGGGATGGTGCTCCAGGACACATGGCTG
TTCGGCGGCACGATCGCGGACAATATCGCGTACGGAGCCTCCCGTGAGGTGACCCGCGAGGAGATCGAGGAGGCGGCGCG
CGCCGCGCACGCCGACCGGTTCATCCGTACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCTCGGGCGTGA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCTCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAGGCGACC
AGCTCGGTGGACACCCGTACGGAGGTGCTCATCCAGAAGGCGATGGCGCGTCTCGCCCACGGCCGCACGAGCTTCGTCAT
CGCGCACCGGCTCTCCACGATCAGGGACGCGGACGTGATCCTGGTGATGGAGAGCGGGGCGATCGTCGAACAGGGCACGC
ATGAGGAGCTGTTGGCGGCGCAGGGGGCGTATGCGCGGCTGTACGCGGCGCAGTTCGCCCAGGCGGTGGTGGAGGTGGAG
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(38-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.357

96.406

0.389