Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   L3V65_RS08320 Genome accession   NZ_CP091468
Coordinates   1688661..1689785 (-) Length   374 a.a.
NCBI ID   WP_272907733.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain 19-1-JSRL-34-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683661..1694785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V65_RS08275 (L3V65_08275) - 1684230..1685021 (+) 792 WP_237348196.1 YqhG family protein -
  L3V65_RS08280 (L3V65_08280) - 1685055..1685231 (-) 177 WP_237348197.1 YqzE family protein -
  L3V65_RS08285 (L3V65_08285) - 1685218..1685775 (-) 558 WP_237348198.1 shikimate kinase -
  L3V65_RS08290 (L3V65_08290) comGG 1685772..1686140 (-) 369 WP_029142070.1 competence type IV pilus minor pilin ComGG -
  L3V65_RS08295 (L3V65_08295) comGF 1686137..1686619 (-) 483 WP_237348199.1 competence type IV pilus minor pilin ComGF -
  L3V65_RS08300 (L3V65_08300) - 1686582..1686890 (-) 309 WP_237348200.1 type II secretion system protein -
  L3V65_RS08305 (L3V65_08305) comGD 1686877..1687320 (-) 444 WP_237348201.1 competence type IV pilus minor pilin ComGD -
  L3V65_RS08310 (L3V65_08310) comGC 1687317..1687628 (-) 312 WP_237348202.1 competence type IV pilus major pilin ComGC -
  L3V65_RS08315 (L3V65_08315) comGB 1687697..1688659 (-) 963 WP_237348203.1 competence type IV pilus assembly protein ComGB -
  L3V65_RS08320 (L3V65_08320) comGA 1688661..1689785 (-) 1125 WP_272907733.1 competence type IV pilus ATPase ComGA Machinery gene
  L3V65_RS08325 (L3V65_08325) - 1689980..1690687 (+) 708 WP_013859648.1 metalloregulator ArsR/SmtB family transcription factor -
  L3V65_RS08330 (L3V65_08330) - 1690765..1691007 (+) 243 WP_014098019.1 DUF2626 domain-containing protein -
  L3V65_RS08335 (L3V65_08335) - 1691077..1691706 (-) 630 WP_237348204.1 MBL fold metallo-hydrolase -
  L3V65_RS08340 (L3V65_08340) - 1691836..1692009 (+) 174 WP_017554326.1 DUF2759 domain-containing protein -
  L3V65_RS08345 (L3V65_08345) - 1692108..1693076 (-) 969 WP_237348205.1 ROK family glucokinase -
  L3V65_RS08350 (L3V65_08350) - 1693069..1693290 (-) 222 WP_013859652.1 YqgQ family protein -
  L3V65_RS08355 (L3V65_08355) - 1693599..1694765 (-) 1167 WP_029142060.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 42420.97 Da        Isoelectric Point: 9.4407

>NTDB_id=651523 L3V65_RS08320 WP_272907733.1 1688661..1689785(-) (comGA) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFVM
NVLQQTISLRISTLPTSLSKESLVIRILPHEEQFQLSQISLFPSSTKKLMALLNHSHGMLIFSGPTGSGKSTTMYTLVEH
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAIRASLTGHLVLTTLH
TRDAKGAIYRMMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDSQDCPRSREKRQTAVYELLYGKNLQRVLKEA
KGEQVYYHYPTLKEWLRKGIVLGYISEEEYHRWIAEEEEADKPQTAGALSYPGR

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=651523 L3V65_RS08320 WP_272907733.1 1688661..1689785(-) (comGA) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
ATGTCAGTTGAAAAAATTGCGGAACTTTTGATCGGACAGGCGGTAAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAAAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTGAAATTTATGTCTTCCATGGATATCAGTGAAAAACGGAAACCCCAAAGCGGGTCGTTTGTCATG
AACGTTTTGCAGCAGACGATCTCCTTAAGGATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTTATTCGGAT
CTTGCCCCATGAAGAACAATTCCAGCTCAGCCAAATTTCACTTTTTCCATCGAGCACAAAAAAATTAATGGCGCTATTAA
ACCATTCGCATGGGATGCTGATTTTCAGCGGCCCGACTGGAAGCGGCAAGTCTACGACGATGTATACGCTTGTTGAGCAC
TGCGCAAAACGGTTTTTACGGAATGTGATTACACTGGAAGACCCTGTTGAAAAACAAAGCGACTCGTTTTTGCAGGTACA
GGTGAATGAAAAAGCAGGTATTACTTACAGCACAGGGCTGAAAGCGATTTTGCGCCATGATCCGGATATTATCCTGGTGG
GGGAAATCCGTGATGCCGAAACAGCAAGAATTGCGATCCGCGCATCACTCACCGGCCATCTTGTCCTGACGACATTGCAT
ACGCGTGACGCAAAGGGCGCGATCTACAGGATGATGGAATTCGGCGTGAGCATCCACGAAATGGAGCAGACTTTGCTCGC
TGTCAGCGCACAGCGGCTGATTACATTGCGATGCCCGGTATGCGGTGGGATCCGCTGTCCGCATGATTCGCAAGATTGCC
CACGCAGCCGAGAAAAGCGGCAAACCGCGGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGAGTGTTGAAAGAAGCA
AAGGGGGAACAAGTCTACTATCATTATCCGACACTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGA
AGAAGAGTATCACCGCTGGATTGCCGAAGAGGAAGAAGCGGATAAGCCTCAAACTGCAGGGGCGCTTTCTTACCCGGGTC
GGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.19

95.722

0.519