Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L3V65_RS08090 Genome accession   NZ_CP091468
Coordinates   1650202..1651905 (-) Length   567 a.a.
NCBI ID   WP_118497728.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain 19-1-JSRL-34-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1645202..1656905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V65_RS08060 (L3V65_08060) - 1645925..1646074 (-) 150 WP_206691682.1 helix-turn-helix domain-containing protein -
  L3V65_RS08065 (L3V65_08065) - 1646121..1646402 (-) 282 WP_237348184.1 hypothetical protein -
  L3V65_RS08070 (L3V65_08070) - 1646673..1646915 (+) 243 WP_237348185.1 DUF2627 domain-containing protein -
  L3V65_RS08075 (L3V65_08075) - 1646925..1647668 (-) 744 WP_061575203.1 glycerophosphodiester phosphodiesterase -
  L3V65_RS08080 (L3V65_08080) spo0A 1647787..1648572 (-) 786 WP_237348186.1 sporulation transcription factor Spo0A -
  L3V65_RS08085 (L3V65_08085) spoIVB 1648739..1650022 (-) 1284 WP_019720618.1 SpoIVB peptidase -
  L3V65_RS08090 (L3V65_08090) recN 1650202..1651905 (-) 1704 WP_118497728.1 DNA repair protein RecN Machinery gene
  L3V65_RS08095 (L3V65_08095) argR 1651923..1652372 (-) 450 WP_013859601.1 transcriptional regulator ArgR -
  L3V65_RS08100 (L3V65_08100) - 1652536..1653360 (-) 825 WP_237348187.1 TlyA family RNA methyltransferase -
  L3V65_RS08105 (L3V65_08105) dxs 1653361..1655262 (-) 1902 WP_237348188.1 1-deoxy-D-xylulose-5-phosphate synthase -
  L3V65_RS08110 (L3V65_08110) - 1655411..1656280 (-) 870 WP_019720614.1 polyprenyl synthetase family protein -
  L3V65_RS08115 (L3V65_08115) - 1656283..1656510 (-) 228 WP_013859605.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64511.34 Da        Isoelectric Point: 4.7975

>NTDB_id=651522 L3V65_RS08090 WP_118497728.1 1650202..1651905(-) (recN) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
MLQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRGSSEFVRHGENRAEIEGLFLVEDGHPCMERA
REFGIEIEEGMVILRRDISKTGKSVCRINGKLVTISVLREIGSTLIDIHSQHETQELLNETYHLPLLDQYGQSEIETALL
DYEKLYKKYEAVYGRLKRMNENDQQLAQRLDLIQFQHEEIQNAGLRLHEDEELAEEKRKLVNFERLFESLNTGYEALAGE
QHGLDWLSLAMSHLETAAEVDGGLSDILESVQSCFYTLEDMSRSIRSRLDGLEFDPERLNVIEARLNEINQLKRKYGSTI
EEILEYGSKIEEEIESIVNRDHHVELLQEELQTVKRDLYLEAKQLSDLRKKWAEKLTENIHSELKQLYMDKTKFEVRFLA
AADDYYEADDIPFRRDGLDQVEFYISTNPGEPLKPLAKTASGGELSRIMLALKTIFSRHQGITSVIFDEVDTGVSGRVAQ
AIAEKIYHISVHSQVLCITHLPQVAAMADTHLLIMKETEKGRTRTKVKPLGQEEKIKEIGRMISGVEMTELTRQHAKELL
ELAEAIK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=651522 L3V65_RS08090 WP_118497728.1 1650202..1651905(-) (recN) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
TTGCTGCAGGAATTATCGATTAAAAATTTTGCCATTATTGATGCGCTAACCCTCTCATTTGAAGCCGGGCTGACTGTCCT
GACAGGGGAGACCGGTGCCGGCAAATCGATTATTATCGATGCGATCCAGCTTTTAACAGGCGGGAGAGGGTCATCGGAGT
TTGTCCGGCACGGGGAAAACCGTGCTGAGATTGAGGGTTTATTTCTGGTCGAAGACGGCCATCCGTGTATGGAGCGCGCC
CGCGAATTCGGCATTGAGATTGAGGAAGGCATGGTCATTTTGCGGCGCGATATATCGAAAACAGGGAAAAGCGTCTGCCG
CATCAACGGAAAACTTGTGACGATTTCGGTGCTGCGCGAAATCGGGTCGACTTTAATTGATATCCACAGCCAGCACGAAA
CGCAGGAACTGCTGAACGAAACGTACCATCTGCCGCTGCTTGACCAGTACGGGCAAAGCGAGATCGAAACGGCCCTCCTT
GATTACGAAAAATTATATAAAAAATACGAAGCCGTTTACGGGCGGTTAAAAAGAATGAATGAAAACGACCAGCAGCTTGC
CCAGCGCCTTGACCTCATCCAGTTCCAGCATGAGGAAATCCAAAACGCAGGGCTGAGGCTGCATGAAGACGAGGAATTAG
CGGAAGAAAAACGAAAACTCGTCAATTTTGAACGGCTGTTTGAATCATTGAACACGGGGTATGAAGCGCTTGCCGGGGAA
CAGCACGGCCTCGACTGGCTCAGCCTTGCCATGAGCCATCTTGAAACCGCGGCCGAAGTGGATGGCGGGCTCTCTGACAT
TTTGGAATCCGTCCAAAGTTGTTTTTATACGCTCGAAGACATGTCCCGCTCGATCCGTTCCCGGCTTGACGGGCTTGAAT
TTGACCCGGAACGGCTTAACGTGATTGAAGCGCGGCTGAATGAGATTAACCAGTTAAAACGAAAATACGGCAGCACGATC
GAAGAAATTCTGGAATACGGGTCCAAAATTGAAGAAGAAATTGAATCGATCGTAAACCGCGACCATCATGTAGAGCTTTT
GCAAGAAGAACTGCAGACGGTAAAACGCGATCTTTATTTGGAAGCCAAGCAGCTCAGCGATTTGCGCAAAAAATGGGCGG
AAAAGCTGACTGAAAATATCCATTCCGAATTAAAGCAGCTGTATATGGATAAAACAAAGTTTGAAGTCCGTTTTCTTGCC
GCTGCTGATGATTATTATGAGGCGGATGACATTCCGTTTAGGCGCGACGGGCTCGATCAGGTTGAATTTTACATTTCCAC
CAACCCGGGCGAACCGCTAAAACCGCTCGCAAAAACTGCTTCAGGCGGGGAATTGTCGCGGATTATGCTGGCATTAAAAA
CGATTTTTTCCCGGCACCAGGGGATCACTTCCGTCATTTTCGACGAAGTGGACACCGGCGTAAGCGGCCGCGTAGCACAG
GCGATTGCGGAAAAAATTTACCATATCTCGGTCCATTCGCAAGTTCTTTGCATTACCCATCTGCCGCAGGTTGCCGCCAT
GGCGGACACGCATCTGCTGATCATGAAAGAAACCGAAAAGGGGAGAACGCGGACAAAAGTGAAGCCTTTAGGGCAGGAAG
AAAAAATTAAAGAAATCGGCCGCATGATTTCAGGTGTTGAAATGACAGAGCTGACAAGACAGCATGCGAAAGAGCTCCTC
GAACTGGCCGAAGCGATAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.337

100

0.6