Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   L3V65_RS04305 Genome accession   NZ_CP091468
Coordinates   910457..912271 (+) Length   604 a.a.
NCBI ID   WP_118498035.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain 19-1-JSRL-34-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 905457..917271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V65_RS04285 (L3V65_04285) - 906259..907200 (+) 942 WP_237349088.1 ABC transporter ATP-binding protein -
  L3V65_RS04290 (L3V65_04290) spxA 907479..907874 (+) 396 WP_013858789.1 transcriptional regulator SpxA -
  L3V65_RS04295 (L3V65_04295) mecA 908240..908899 (+) 660 WP_019721828.1 adaptor protein MecA -
  L3V65_RS04300 (L3V65_04300) - 909163..910389 (+) 1227 WP_258433941.1 competence protein CoiA -
  L3V65_RS04305 (L3V65_04305) pepF 910457..912271 (+) 1815 WP_118498035.1 oligoendopeptidase F Regulator
  L3V65_RS04310 (L3V65_04310) - 912663..912854 (-) 192 WP_061566778.1 hypothetical protein -
  L3V65_RS04315 (L3V65_04315) - 913145..914002 (-) 858 WP_272907884.1 ClpXP adapter SpxH family protein -
  L3V65_RS04320 (L3V65_04320) - 913999..914400 (-) 402 WP_237349090.1 globin -
  L3V65_RS04325 (L3V65_04325) - 916044..916823 (-) 780 WP_237349091.1 lytic transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69284.95 Da        Isoelectric Point: 5.0639

>NTDB_id=651513 L3V65_RS04305 WP_118498035.1 910457..912271(+) (pepF) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
MENGKKVHALPSRNEVPDELTWRLEDIFPSDDDWNKEYEAVKEKLAGAASYQGKLGESAEQLYHALQFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGMDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYVPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYHSAREAALAANHIPEKVYDQLVETVNRNLGLLQRYVALRKKVLQLDEVHMYDLYTPLVQDVDM
EVTYEKAKEIVLDGLHPLGGEYQGILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYFGTDIAIDQEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMASPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=651513 L3V65_RS04305 WP_118498035.1 910457..912271(+) (pepF) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
ATGGAAAACGGGAAAAAAGTACACGCGTTGCCAAGCCGGAACGAGGTCCCTGACGAATTAACCTGGAGGCTTGAGGATAT
TTTTCCGAGTGACGATGACTGGAATAAAGAATATGAAGCAGTAAAAGAAAAGCTGGCCGGTGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCGGAACAGCTTTATCATGCGCTCCAGTTCCAGGATGAAGTGACGGAAAGGTTCGGCAAGCTGTAT
ACATACGCACATATGCGTTATGACCAGGACACAACGAATGCCTTTTACCAGGGGATGGACAGCAAAGCGAAAAGCCTTGC
CGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTGTCGATTGAGGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGTGCCGCTTCAGCTGTACCGGCATGCATTGGAAGAAATTAATGAAATGCGCCCGCATATTTTATCTAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCGGAAGTGTTGAATACTTCCAGCACCACTTTCGGCATGCTCAACAATGCAGACCT
TGAGTTCCCGACAGTAATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGCTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAAAAATTGTACGCGACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTAGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTGCGGC
AAACCACATTCCGGAAAAAGTGTACGACCAGCTCGTGGAGACGGTGAACCGAAATCTCGGTTTGCTGCAGCGGTATGTTG
CTTTGCGCAAAAAAGTGCTGCAGCTTGATGAAGTGCATATGTACGATCTGTATACGCCGCTTGTCCAGGACGTCGATATG
GAAGTGACATATGAAAAAGCGAAAGAGATCGTGCTTGACGGACTCCATCCACTCGGCGGGGAATACCAGGGCATTTTACA
GCAGGCGTTTGAAAACCGCTGGATTGACGTGGTGGAAAACAAAGGCAAGCGGAGCGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCCATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCGCTGTTGAACGATTATTTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTACTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTCTTCCGCCAGACGATGTTTGCCGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGCTGACAGCGGAACTTTTGACAGATGAGTATTATAAGCTGAACCAAAAATACTTTGGCACGGATATCGC
CATCGATCAGGAAATCGGGCTTGAGTGGGCACGCATTCCGCATTTTTATTACAATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGTTACATCGGCTATTTA
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGGCATCGCCCCAGCCGGTCGAAGA
TGCGTTAAAAGTATTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.507

98.013

0.495