Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L3V65_RS03570 Genome accession   NZ_CP091468
Coordinates   752916..753866 (+) Length   316 a.a.
NCBI ID   WP_019721713.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain 19-1-JSRL-34-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747916..758866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V65_RS03555 (L3V65_03555) - 748320..749303 (+) 984 WP_237349027.1 homoserine dehydrogenase -
  L3V65_RS03560 (L3V65_03560) - 749754..751190 (+) 1437 WP_237349028.1 S41 family peptidase -
  L3V65_RS03565 (L3V65_03565) - 751469..752656 (+) 1188 WP_367615227.1 PDZ domain-containing protein -
  L3V65_RS03570 (L3V65_03570) ceuB 752916..753866 (+) 951 WP_019721713.1 ABC transporter permease Machinery gene
  L3V65_RS03575 (L3V65_03575) - 753859..754809 (+) 951 WP_272907871.1 iron chelate uptake ABC transporter family permease subunit -
  L3V65_RS03580 (L3V65_03580) - 754803..755561 (+) 759 WP_237349030.1 ABC transporter ATP-binding protein -
  L3V65_RS03585 (L3V65_03585) - 755576..756514 (+) 939 WP_237349031.1 siderophore ABC transporter substrate-binding protein -
  L3V65_RS03590 (L3V65_03590) - 756571..756807 (-) 237 WP_026104642.1 4Fe-4S binding protein -
  L3V65_RS03595 (L3V65_03595) - 757114..757416 (+) 303 WP_237349032.1 DUF5316 domain-containing protein -
  L3V65_RS03600 (L3V65_03600) - 757451..757600 (+) 150 WP_272907872.1 DUF5316 family protein -
  L3V65_RS03605 (L3V65_03605) - 757712..758404 (+) 693 WP_237349033.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34406.49 Da        Isoelectric Point: 9.9995

>NTDB_id=651506 L3V65_RS03570 WP_019721713.1 752916..753866(+) (ceuB) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSREQTEILLASRLPRLISIIIAGVGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKYDLV
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVINLGLALVALITSVTVLTVGT
IPFLGLIIPNIVSVYRGDHMKKSITVTALLGAVFLLFCDILGRIVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=651506 L3V65_RS03570 WP_019721713.1 752916..753866(+) (ceuB) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTGCTGTCCATCATTTCGATTTTTATCGGCGCGGAAAATATCAGGCC
GGCGGATATGCTCCATTTAAGCAGGGAGCAGACAGAAATTTTGCTGGCAAGCCGCCTGCCGCGCCTGATCAGCATCATCA
TTGCGGGCGTGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGCTGACGAGAAATAAATTTGTCTCACCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTGGTTGCGATCATCCTGTTTTCTGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCCTTTTGCTTTGCCCTGGCCGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACAATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGTTCTGTATCTACTTTTTTTGCGTATAAATACGACTTAGTC
CAGAGCCTTTCTTCATGGCTGCAAGGCGATTTTTCAGGCGTACTGAAAGGGAAGTACGAGATGCTTTATTTAGCAGTTCC
GGCCGTTTTGGTCGCGTATGTGTTTGCCAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAATCTTGGCT
TGAATTACAAGCAGGTGATCAACCTCGGTCTTGCCCTTGTCGCGCTGATTACTTCGGTAACTGTGCTGACAGTCGGCACT
ATCCCGTTTCTGGGCCTGATCATTCCGAACATTGTGTCTGTTTACCGTGGCGACCATATGAAAAAAAGCATTACGGTTAC
GGCGCTGCTTGGGGCGGTGTTTCTGCTGTTTTGCGATATTTTGGGGCGCATTGTCATTTATCCGTATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGCGGCATTTTTGTATATTTGCTGCTGAGGAGGCACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.438

99.051

0.509