Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   L3V65_RS03325 Genome accession   NZ_CP091468
Coordinates   699147..700532 (+) Length   461 a.a.
NCBI ID   WP_237349005.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain 19-1-JSRL-34-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 694147..705532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V65_RS03310 (L3V65_03310) - 695056..695739 (+) 684 WP_237349003.1 response regulator transcription factor -
  L3V65_RS03315 (L3V65_03315) - 696020..697444 (-) 1425 WP_237349004.1 amino acid permease -
  L3V65_RS03320 (L3V65_03320) - 698009..698851 (+) 843 WP_061574682.1 DegV family protein -
  L3V65_RS03325 (L3V65_03325) comFA 699147..700532 (+) 1386 WP_237349005.1 DEAD/DEAH box helicase Machinery gene
  L3V65_RS03330 (L3V65_03330) - 700525..701232 (+) 708 WP_014095891.1 ComF family protein -
  L3V65_RS03335 (L3V65_03335) - 701299..701694 (+) 396 WP_237349006.1 TIGR03826 family flagellar region protein -
  L3V65_RS03340 (L3V65_03340) flgM 701765..702031 (+) 267 WP_237349007.1 flagellar biosynthesis anti-sigma factor FlgM -
  L3V65_RS03345 (L3V65_03345) - 702044..702514 (+) 471 WP_237349008.1 flagellar protein FlgN -
  L3V65_RS03350 (L3V65_03350) flgK 702537..704153 (+) 1617 WP_237349009.1 flagellar hook-associated protein FlgK -
  L3V65_RS03355 (L3V65_03355) flgL 704168..705061 (+) 894 WP_237349010.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51496.78 Da        Isoelectric Point: 8.9040

>NTDB_id=651505 L3V65_RS03325 WP_237349005.1 699147..700532(+) (comFA) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
MPSVFSEQLQHHLAGRILLEPEIPFSPELVEQHLKQGWIRAEPAIQGEFPHCVCLRCGNRAPHLFAEFPCAHCGKTSIYC
RNCLMMGRVTACKPLFTWAGPAPAFHPPRHPLHWEGTLSEGQQAASEAVKIAILQKNELLVWAVCGAGKTEVLFNGIEAA
LANGERVCIATPRTDVVLELAPRFRRVFPDIPIAALYGGSPDRHKWAQLVISTTHQLYRFASAFDAVIVDEVDAFPYTFD
ETLQRAVQKAAKDRCARIYLTATPGETWQLECKAGKRPFVTIPARYHRKPLPVPIFKWAGNWRRKFEKGQLPVPVEAWVK
KRLETGKQALLFLPNIRLMKKAEPVFKQLHPSIESVHAEDPERKEKVEKMRAGKTPILLTTTILERGVTFPNIDVCVVGA
EDAIFTEAALVQIAGRAGRSADFPSGDVTFFHYGKSNAMVKAQRHILSMNEEAGKRGLLDA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=651505 L3V65_RS03325 WP_237349005.1 699147..700532(+) (comFA) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
TTGCCTTCTGTTTTCTCCGAACAGCTTCAACACCACCTCGCAGGGAGGATCCTGCTCGAACCGGAAATCCCTTTTTCGCC
GGAACTAGTCGAACAGCACTTAAAACAAGGCTGGATCCGCGCTGAGCCGGCGATTCAGGGCGAATTCCCGCACTGTGTCT
GCTTGCGCTGCGGCAACCGCGCGCCGCATCTTTTTGCCGAATTCCCTTGCGCCCACTGCGGGAAAACGAGCATCTATTGC
CGGAACTGCCTGATGATGGGGCGGGTTACCGCATGCAAGCCGCTTTTCACATGGGCAGGCCCTGCGCCCGCATTCCACCC
GCCCCGGCACCCGCTCCATTGGGAAGGGACCCTCTCTGAAGGGCAGCAGGCCGCATCCGAAGCGGTCAAAATAGCCATTC
TCCAAAAAAATGAGCTCTTGGTTTGGGCGGTTTGCGGAGCAGGTAAAACAGAGGTCCTTTTTAACGGGATTGAAGCGGCG
CTTGCAAACGGCGAACGCGTCTGCATCGCGACACCAAGGACAGATGTCGTCCTTGAACTTGCCCCCCGCTTCCGCCGCGT
TTTCCCGGATATTCCGATTGCCGCGCTCTACGGCGGCAGCCCTGACCGCCATAAATGGGCGCAGCTCGTGATCTCCACTA
CCCACCAGCTGTACCGCTTCGCATCTGCTTTCGATGCCGTAATTGTGGATGAGGTGGACGCTTTTCCGTATACTTTCGAT
GAAACGCTGCAGCGCGCCGTCCAAAAAGCGGCAAAAGATAGGTGCGCCCGCATTTATCTTACCGCAACGCCGGGTGAAAC
ATGGCAGCTTGAATGCAAGGCAGGCAAGCGCCCGTTTGTCACGATCCCGGCCCGTTACCACCGCAAGCCCCTCCCCGTTC
CTATATTCAAATGGGCAGGCAACTGGCGGAGAAAGTTTGAAAAAGGACAGCTCCCGGTTCCAGTTGAAGCATGGGTAAAA
AAGAGACTTGAAACCGGAAAACAGGCGCTTCTTTTTCTCCCGAACATCCGCCTCATGAAAAAAGCAGAACCGGTTTTTAA
ACAACTGCATCCGTCGATTGAATCGGTGCACGCAGAAGACCCGGAACGGAAAGAAAAAGTGGAAAAGATGCGCGCCGGCA
AAACGCCGATTTTGCTGACGACGACCATTCTTGAACGCGGCGTCACGTTTCCGAATATTGATGTCTGTGTCGTCGGGGCG
GAAGATGCTATCTTTACGGAAGCTGCCCTCGTCCAGATCGCGGGCCGGGCTGGGAGAAGCGCCGATTTCCCAAGTGGGGA
CGTGACGTTTTTCCATTACGGAAAATCAAATGCGATGGTGAAAGCACAGCGCCATATTCTCTCCATGAATGAAGAAGCGG
GAAAGCGGGGGTTGCTCGATGCATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-265)

Helicase conserved C-terminal domain (Helicase_C)

(322-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.669

98.265

0.488
  comFA Latilactobacillus sakei subsp. sakei 23K

40.238

91.106

0.367