Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG905_RS11470 Genome accession   NZ_CP108019
Coordinates   2554083..2554868 (+) Length   261 a.a.
NCBI ID   WP_142213283.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2549083..2559868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS11455 (OG905_11460) - 2549300..2549821 (+) 522 WP_328667630.1 TerD family protein -
  OG905_RS11460 (OG905_11465) - 2549899..2552796 (-) 2898 WP_328667631.1 vitamin B12-dependent ribonucleotide reductase -
  OG905_RS11465 (OG905_11470) nrdR 2552970..2553482 (-) 513 WP_266489153.1 transcriptional regulator NrdR -
  OG905_RS11470 (OG905_11475) dinR/lexA 2554083..2554868 (+) 786 WP_142213283.1 transcriptional repressor LexA Regulator
  OG905_RS11475 (OG905_11480) - 2554969..2556963 (-) 1995 WP_328667632.1 ATP-dependent DNA helicase -
  OG905_RS11480 (OG905_11485) - 2557013..2558845 (-) 1833 WP_328667633.1 IucA/IucC family siderophore biosynthesis protein -
  OG905_RS11485 (OG905_11490) - 2558921..2559658 (-) 738 WP_328667634.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28298.05 Da        Isoelectric Point: 8.0891

>NTDB_id=651493 OG905_RS11470 WP_142213283.1 2554083..2554868(+) (dinR/lexA) [Streptomyces sp. NBC_00322]
MTTTADSATITAQDRSQNRFEPVHAMNDAATTPEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRENGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=651493 OG905_RS11470 WP_142213283.1 2554083..2554868(+) (dinR/lexA) [Streptomyces sp. NBC_00322]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAACCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGACACCCGAGGGGCCCAAGCCCACGCGTTCGCTGCCCGGCCGACCTCCAGGGATCCGAGCCGACAGCT
CCGGTCTCACGGATCGGCAGCGGCGCGTCATCGAGGTGATCCGTGACTCCGTACAGCGTCGGGGATACCCGCCGTCGATG
CGTGAGATCGGCCAGGCGGTCGGGCTGTCCAGCACTTCTTCCGTGGCACACCAGCTCATGGCTCTGGAGCGCAAGGGCTT
CCTGCGCCGGGACCCGCACCGCCCCAGGGCGTACGAGGTGCGCGGCTCCGACCAGCCCAGCACGCAGCCGACCGACACGA
CCGGCAAGCCCGCCGCCTCGTATGTGCCGCTCGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCCGAAGAGTCCGTC
GAGGACGTCTTCCCGCTGCCCCGCCAGCTTGTGGGTGACGGCGAGTTGTTCGTGCTGAAGGTCGTCGGCGACTCGATGAT
CGAGGCCGCGATCTGCGACGGCGACTGGGTGACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTGGCCGCGA
TGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGAACGGCCATGTGTGGCTCCTCCCGCACAACGCGGCGTAC
CAGCCGATTCCGGGTGATGAGGCGACCATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.755

81.226

0.372