Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG905_RS11150 Genome accession   NZ_CP108019
Coordinates   2483452..2484126 (-) Length   224 a.a.
NCBI ID   WP_328667579.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2478452..2489126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS11130 (OG905_11135) - 2478892..2480535 (+) 1644 WP_328667575.1 sensor histidine kinase -
  OG905_RS11135 (OG905_11140) - 2480532..2481257 (+) 726 WP_328667576.1 response regulator -
  OG905_RS11140 (OG905_11145) - 2481288..2482880 (-) 1593 WP_328667577.1 cation acetate symporter -
  OG905_RS11145 (OG905_11150) - 2482877..2483353 (-) 477 WP_328667578.1 DUF485 domain-containing protein -
  OG905_RS11150 (OG905_11155) vraR 2483452..2484126 (-) 675 WP_328667579.1 response regulator transcription factor Regulator
  OG905_RS11155 (OG905_11160) - 2484123..2485283 (-) 1161 WP_328667580.1 histidine kinase -
  OG905_RS11160 (OG905_11165) - 2485389..2487506 (-) 2118 WP_328667581.1 DNA topoisomerase IV subunit B -
  OG905_RS11165 (OG905_11170) - 2487940..2488170 (+) 231 WP_142213264.1 hypothetical protein -
  OG905_RS11170 (OG905_11175) - 2488299..2489120 (-) 822 WP_328667582.1 serine protease -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23876.29 Da        Isoelectric Point: 5.1188

>NTDB_id=651492 OG905_RS11150 WP_328667579.1 2483452..2484126(-) (vraR) [Streptomyces sp. NBC_00322]
MTTQDARVIVVDDQAVVREGIVMLLGLLPGIEVVGSAKDGEEAVALVAELAPDVALMDLRMPRCDGVEATRRIRSEHPGT
QIVVLTTYADDDSLFPALRAGARGYLTKDAGGDEIVRAIQDVMAGRAGLSAVVQQRLLEQVASAPEPPGPRLPDGLTARE
GEVLTLIAEGLTNVDIARRLHISTATVKTHINNLFSKTGIHDRAQAVRYAYREGLARPPGSSIT

Nucleotide


Download         Length: 675 bp        

>NTDB_id=651492 OG905_RS11150 WP_328667579.1 2483452..2484126(-) (vraR) [Streptomyces sp. NBC_00322]
ATGACAACGCAGGACGCCAGAGTGATCGTCGTCGACGACCAGGCCGTGGTGCGCGAGGGCATTGTGATGCTCCTGGGGCT
GCTGCCCGGCATAGAGGTCGTCGGCTCGGCCAAGGACGGCGAGGAGGCGGTCGCTCTCGTCGCCGAACTCGCCCCCGATG
TCGCCCTGATGGATCTGCGGATGCCCCGCTGCGACGGCGTGGAGGCGACCCGCCGCATCCGCAGCGAACATCCGGGCACC
CAGATCGTCGTGCTCACCACCTATGCCGACGACGACTCGCTGTTCCCCGCGCTGCGGGCGGGAGCGCGTGGATATCTCAC
CAAGGACGCCGGCGGCGACGAGATCGTACGGGCCATTCAGGACGTCATGGCAGGTCGCGCCGGGCTCTCGGCGGTCGTCC
AGCAGCGGCTGCTCGAGCAGGTCGCGTCCGCGCCCGAACCACCGGGGCCGAGGCTGCCCGACGGGCTGACCGCGCGCGAG
GGCGAGGTGCTGACCCTGATCGCGGAGGGCCTCACCAACGTCGACATCGCGCGCAGGCTGCACATTTCCACGGCCACGGT
GAAGACGCACATCAACAATCTCTTCTCGAAGACCGGTATCCACGACCGCGCTCAGGCGGTGCGGTACGCCTATCGGGAAG
GTCTTGCGCGGCCACCTGGGTCGAGCATCACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.756

93.304

0.362