Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG905_RS08345 Genome accession   NZ_CP108019
Coordinates   1839343..1840014 (-) Length   223 a.a.
NCBI ID   WP_328667073.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834343..1845014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS08325 (OG905_08335) - 1835060..1836058 (-) 999 WP_328667068.1 substrate-binding domain-containing protein -
  OG905_RS08330 (OG905_08340) - 1836202..1836921 (-) 720 WP_328682111.1 GntR family transcriptional regulator -
  OG905_RS08335 (OG905_08345) - 1837077..1838081 (+) 1005 WP_328667070.1 Gfo/Idh/MocA family oxidoreductase -
  OG905_RS08340 (OG905_08350) - 1838146..1839324 (-) 1179 WP_328667071.1 cytochrome P450 -
  OG905_RS08345 (OG905_08355) vraR 1839343..1840014 (-) 672 WP_328667073.1 response regulator transcription factor Regulator
  OG905_RS08350 (OG905_08360) - 1840020..1841234 (-) 1215 WP_328667075.1 histidine kinase -
  OG905_RS08355 (OG905_08365) - 1841380..1841598 (+) 219 WP_328667077.1 hypothetical protein -
  OG905_RS08360 (OG905_08370) - 1841608..1841982 (-) 375 WP_328667079.1 hypothetical protein -
  OG905_RS08365 (OG905_08375) - 1842160..1842768 (-) 609 WP_328667081.1 dihydrofolate reductase family protein -
  OG905_RS08370 (OG905_08380) - 1842876..1843706 (-) 831 WP_328667083.1 AIM24 family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23689.15 Da        Isoelectric Point: 4.7489

>NTDB_id=651484 OG905_RS08345 WP_328667073.1 1839343..1840014(-) (vraR) [Streptomyces sp. NBC_00322]
MTIRLLVVDDDPLVRAGLAFMFGGADDLEIVGEGADGSEAVALVDRLAPDVVLMDIRMPGMDGLTATEGLRRRPDAPEVV
VLTTFHADEQVLRALRAGAAGFVLKDTAPAEIVAAVRRVAAGDPVLSPAVTRQLMTQVADRDPGTRRKSAAERIASLADR
EREVAVAVGRGRSNAEIAATLYMSVPTVKTHVSRILAKLDLNNRVQIALLAHDAGLLDEDEPS

Nucleotide


Download         Length: 672 bp        

>NTDB_id=651484 OG905_RS08345 WP_328667073.1 1839343..1840014(-) (vraR) [Streptomyces sp. NBC_00322]
ATGACTATCCGGTTGCTCGTCGTCGATGACGACCCTCTCGTCCGCGCGGGACTCGCCTTCATGTTCGGCGGAGCCGACGA
CCTCGAGATCGTGGGGGAGGGGGCCGACGGCTCGGAGGCCGTGGCACTCGTCGACCGGCTCGCGCCCGATGTGGTGCTGA
TGGACATCCGGATGCCGGGGATGGACGGCCTCACCGCCACCGAGGGACTGCGCCGCCGCCCAGACGCCCCCGAAGTCGTC
GTCCTCACCACCTTCCACGCGGACGAACAGGTGCTGCGGGCGCTGCGCGCGGGAGCCGCCGGATTCGTCCTGAAGGACAC
CGCGCCCGCCGAGATCGTCGCCGCGGTACGGCGGGTGGCGGCGGGCGATCCGGTGCTCTCCCCGGCCGTCACCCGCCAGT
TGATGACACAGGTCGCCGACCGCGACCCCGGCACCCGCAGGAAGTCCGCCGCCGAGCGGATCGCCTCGCTCGCCGACCGC
GAACGGGAGGTGGCCGTCGCCGTCGGCCGCGGCCGGTCCAACGCCGAGATCGCCGCGACCCTCTATATGAGCGTGCCGAC
CGTCAAGACGCATGTCTCGCGCATTCTGGCCAAGCTGGACCTGAACAACCGTGTCCAGATCGCGCTGTTGGCGCACGACG
CGGGCCTGCTCGACGAGGACGAGCCGTCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.71

97.309

0.377