Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG485_RS31260 Genome accession   NZ_CP108013
Coordinates   7113999..7114685 (+) Length   228 a.a.
NCBI ID   WP_328671929.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00328     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7108999..7119685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG485_RS31245 (OG485_31260) - 7109561..7111684 (+) 2124 WP_328671926.1 DNA topoisomerase IV subunit B -
  OG485_RS31250 (OG485_31265) - 7112327..7112854 (+) 528 WP_328671927.1 DUF1453 domain-containing protein -
  OG485_RS31255 (OG485_31270) - 7112851..7114002 (+) 1152 WP_328671928.1 histidine kinase -
  OG485_RS31260 (OG485_31275) vraR 7113999..7114685 (+) 687 WP_328671929.1 response regulator transcription factor Regulator
  OG485_RS31265 (OG485_31280) - 7114791..7115279 (+) 489 WP_328671930.1 DUF485 domain-containing protein -
  OG485_RS31270 (OG485_31285) - 7115276..7116868 (+) 1593 WP_328671931.1 cation acetate symporter -
  OG485_RS31275 (OG485_31290) - 7116935..7117627 (-) 693 WP_328671932.1 response regulator -
  OG485_RS31280 (OG485_31295) - 7117790..7118605 (+) 816 WP_328671933.1 ABC transporter ATP-binding protein -
  OG485_RS31285 (OG485_31300) - 7118595..7119458 (+) 864 WP_328671934.1 ABC transporter permease -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24227.67 Da        Isoelectric Point: 4.7890

>NTDB_id=651459 OG485_RS31260 WP_328671929.1 7113999..7114685(+) (vraR) [Streptomyces sp. NBC_00328]
MTERAEGRAPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGFEAVELVAELAPDVVLMDLRMPRCDGVEATRRIRA
EHPGTQVVVLTTFADDESLFPALRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSDPEPEPGPPPEAP
DGLTSRETEVLLLIAEGLSNQEIARKLHVSTATVKTHINNLFAKAGLKDRAQAVRYAYGKGLVRPPAG

Nucleotide


Download         Length: 687 bp        

>NTDB_id=651459 OG485_RS31260 WP_328671929.1 7113999..7114685(+) (vraR) [Streptomyces sp. NBC_00328]
ATGACCGAGCGGGCGGAGGGCAGGGCACCGGCGCGGGTCGTGGTCGCGGACGATCAGACGGTCGTGCGCGAGGGCATTGT
GATGCTGCTGGGACTGCTGCCCGGGATCGAGGTCGTCGGAGCGGCCGGTGACGGGTTCGAGGCGGTGGAGCTGGTGGCCG
AACTCGCCCCGGACGTCGTGCTGATGGATCTGCGCATGCCTCGCTGCGACGGGGTCGAGGCGACCCGGCGCATCCGTGCC
GAGCATCCCGGGACCCAGGTCGTCGTGCTCACGACGTTCGCGGACGACGAGTCGCTGTTCCCCGCGCTGCGCGCCGGAGC
CCGCGGTTATCTGACCAAGGACGCGGGAGGCGACGAGATCGTGCGGGCCGTGGAGAGCGTGCTCTCCGGGGACGCGGGGC
TCTCGCCGAGCATCCAGCGACGGCTGCTGGAGCGGCTGTCGGACCCGGAACCGGAGCCCGGCCCGCCTCCGGAGGCCCCG
GACGGGCTCACCTCGCGCGAGACGGAGGTGCTCCTGCTCATCGCCGAGGGCCTCAGCAACCAGGAGATCGCTCGTAAGCT
CCATGTGTCCACGGCCACCGTGAAGACCCACATCAATAATCTCTTCGCCAAGGCAGGTCTCAAAGACCGTGCTCAAGCAG
TCCGTTACGCCTATGGGAAAGGTCTCGTACGGCCGCCCGCGGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(13-124)

Bacterial regulatory proteins, luxR family (GerE)

(162-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.437

93.421

0.368