Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LGY76_RS17455 Genome accession   NZ_CP091452
Coordinates   3589795..3590268 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain AB329     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3590350..3596518 3589795..3590268 flank 82


Gene organization within MGE regions


Location: 3589795..3596518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGY76_RS17455 fimU 3589795..3590268 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  LGY76_RS17465 - 3591546..3592367 (+) 822 WP_001046004.1 OXA-23 family carbapenem-hydrolyzing class D beta-lactamase OXA-23 -
  LGY76_RS17470 - 3592472..3593131 (-) 660 Protein_3407 ATP-binding protein -
  LGY76_RS17475 - 3593139..3593234 (+) 96 Protein_3408 hypothetical protein -
  LGY76_RS17480 ispH 3593247..3594197 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LGY76_RS17485 gmk 3594320..3594949 (+) 630 WP_000015937.1 guanylate kinase -
  LGY76_RS17490 rpoZ 3595022..3595300 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=651413 LGY76_RS17455 WP_001214061.1 3589795..3590268(-) (fimU) [Acinetobacter baumannii strain AB329]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=651413 LGY76_RS17455 WP_001214061.1 3589795..3590268(-) (fimU) [Acinetobacter baumannii strain AB329]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987