Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LGY76_RS17450 Genome accession   NZ_CP091452
Coordinates   3589241..3589801 (-) Length   186 a.a.
NCBI ID   WP_085916952.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB329     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3590350..3596518 3589241..3589801 flank 549


Gene organization within MGE regions


Location: 3589241..3596518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGY76_RS17450 pilV 3589241..3589801 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  LGY76_RS17455 fimU 3589795..3590268 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  LGY76_RS17465 - 3591546..3592367 (+) 822 WP_001046004.1 OXA-23 family carbapenem-hydrolyzing class D beta-lactamase OXA-23 -
  LGY76_RS17470 - 3592472..3593131 (-) 660 Protein_3407 ATP-binding protein -
  LGY76_RS17475 - 3593139..3593234 (+) 96 Protein_3408 hypothetical protein -
  LGY76_RS17480 ispH 3593247..3594197 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LGY76_RS17485 gmk 3594320..3594949 (+) 630 WP_000015937.1 guanylate kinase -
  LGY76_RS17490 rpoZ 3595022..3595300 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.13 Da        Isoelectric Point: 8.2254

>NTDB_id=651412 LGY76_RS17450 WP_085916952.1 3589241..3589801(-) (pilV) [Acinetobacter baumannii strain AB329]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGRTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=651412 LGY76_RS17450 WP_085916952.1 3589241..3589801(-) (pilV) [Acinetobacter baumannii strain AB329]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAGAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409