Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG485_RS08995 Genome accession   NZ_CP108013
Coordinates   2073624..2074286 (+) Length   220 a.a.
NCBI ID   WP_328665639.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00328     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2068624..2079286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG485_RS08970 (OG485_08985) mug 2069628..2070176 (+) 549 WP_328674286.1 G/U mismatch-specific DNA glycosylase -
  OG485_RS08975 (OG485_08990) - 2070178..2070621 (-) 444 WP_328665632.1 hypothetical protein -
  OG485_RS08980 (OG485_08995) - 2070680..2071405 (-) 726 WP_328665634.1 ABC transporter permease subunit -
  OG485_RS08985 (OG485_09000) - 2071408..2072337 (-) 930 WP_328665635.1 ATP-binding cassette domain-containing protein -
  OG485_RS08990 (OG485_09005) - 2072446..2073609 (+) 1164 WP_328665637.1 histidine kinase -
  OG485_RS08995 (OG485_09010) vraR 2073624..2074286 (+) 663 WP_328665639.1 response regulator transcription factor Regulator
  OG485_RS09000 (OG485_09015) - 2074385..2075542 (+) 1158 WP_328665641.1 ROK family transcriptional regulator -
  OG485_RS09005 (OG485_09020) - 2075717..2076478 (-) 762 WP_328665642.1 GntR family transcriptional regulator -
  OG485_RS09010 (OG485_09025) - 2076749..2077633 (-) 885 WP_328665644.1 RNA polymerase sigma-70 factor -
  OG485_RS09015 (OG485_09030) - 2077745..2078398 (+) 654 WP_328665647.1 NAD(P)-binding domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23418.99 Da        Isoelectric Point: 4.7428

>NTDB_id=651404 OG485_RS08995 WP_328665639.1 2073624..2074286(+) (vraR) [Streptomyces sp. NBC_00328]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLMDGIETTRAVLRTVADPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGENGGNPAARAAMDRAALTER
EADVLRLMARGMSNAEIAARLVVGTETVKSHVSSVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=651404 OG485_RS08995 WP_328665639.1 2073624..2074286(+) (vraR) [Streptomyces sp. NBC_00328]
ATGCCGGTCACCGTTCTGCTCGTCGACGACGAACCCCTCGTACGCGCGGGGCTGCGCGCCGTGCTGGAGGCGCAGCCCGA
CATCGAGGTCGTCGGGGAGGCCGCCGACGGCGCCGCCGTGATCCCGCTCGTCCGGCAGTTGCGGCCGGACGTGGTCGCCA
TGGACGTCCGGATGCCCCTGATGGACGGCATCGAGACGACCCGCGCGGTACTGCGGACGGTCGCCGACCCGCCCAAGATC
CTCGTGGTGACGACGTTCGAGAACGACGAGTACGTCTACGAGGCGCTGCGCGCGGGGGCCGACGGCTTCCTTCTGAAGCG
GGCGCGGCCGGCCGAGATCGTGCACGCGGTGCGGCTGGTGGCCGAGGGCGAGTCCCTGCTGTTCCCCGCCTCCGTGCGGC
AGTTGGCGGCCGAGTACGGGGAGAACGGTGGGAATCCGGCGGCGCGGGCGGCCATGGATCGGGCCGCGCTGACCGAGCGC
GAGGCGGACGTACTGCGGCTGATGGCACGGGGGATGTCCAACGCCGAGATCGCCGCGCGGCTCGTCGTCGGCACGGAGAC
GGTCAAGTCGCACGTCAGCTCCGTACTGGCGAAGCTGGGTGCCCGGGACCGTACTCAGGCGGTCATCGCGGCCTACGAGT
CGGGGTTCGTGGCGCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.639

99.545

0.405