Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG485_RS02290 Genome accession   NZ_CP108013
Coordinates   551953..552624 (-) Length   223 a.a.
NCBI ID   WP_328663912.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00328     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 546953..557624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG485_RS02260 - 547325..547573 (+) 249 WP_328663899.1 alpha/beta fold hydrolase -
  OG485_RS02265 (OG485_02265) - 547603..548406 (+) 804 WP_328663900.1 alpha/beta hydrolase -
  OG485_RS02270 (OG485_02270) - 548618..549409 (+) 792 WP_328663902.1 MBL fold metallo-hydrolase -
  OG485_RS02275 (OG485_02275) - 549486..549908 (-) 423 Protein_453 carbohydrate binding domain-containing protein -
  OG485_RS02280 (OG485_02280) - 550486..551313 (-) 828 WP_328663905.1 methyltransferase domain-containing protein -
  OG485_RS02285 (OG485_02285) - 551413..551775 (-) 363 WP_328663907.1 DUF1330 domain-containing protein -
  OG485_RS02290 (OG485_02290) dinR/lexA 551953..552624 (-) 672 WP_328663912.1 transcriptional repressor LexA Regulator
  OG485_RS02295 (OG485_02295) - 552767..552955 (-) 189 WP_328457117.1 hypothetical protein -
  OG485_RS02300 (OG485_02300) - 553054..554115 (+) 1062 WP_328663920.1 LuxR C-terminal-related transcriptional regulator -
  OG485_RS02305 (OG485_02305) - 554647..556542 (-) 1896 WP_328663922.1 BTAD domain-containing putative transcriptional regulator -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24116.52 Da        Isoelectric Point: 6.0241

>NTDB_id=651397 OG485_RS02290 WP_328663912.1 551953..552624(-) (dinR/lexA) [Streptomyces sp. NBC_00328]
MENSTPVRRGRPPGVQAVEGELTARQAAIVRYITESVARQGYPPSMREIGQAVELSSTSSVSHQLGALEHKGVLYRDPHR
PRAYRVRPSWAPELAARSSKPAEVPLVGRIAAGAPLLADEMVEDVYFLPRQVVGEGELFALTVSGDSMIDAAICDGDIVT
VRKQDTAEHGDIVAALLEDEATVKVLHRQDGQVWLMPRNASFAPIPGDDARILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=651397 OG485_RS02290 WP_328663912.1 551953..552624(-) (dinR/lexA) [Streptomyces sp. NBC_00328]
ATGGAGAACAGCACGCCAGTACGCCGGGGACGACCTCCGGGCGTACAGGCCGTCGAAGGTGAGCTGACGGCCCGCCAGGC
GGCCATCGTCCGCTACATCACCGAGTCCGTCGCCCGGCAGGGCTACCCGCCGTCGATGCGCGAGATCGGCCAGGCCGTGG
AGCTCTCCAGCACCAGCTCGGTGTCCCACCAACTGGGCGCGCTGGAACACAAGGGTGTGCTCTACCGCGACCCGCACCGT
CCCCGCGCCTACCGTGTGCGTCCTTCCTGGGCCCCCGAGCTCGCCGCCCGGAGCTCGAAGCCGGCCGAGGTGCCGCTCGT
CGGACGGATCGCGGCCGGCGCGCCCCTGCTCGCCGACGAGATGGTCGAGGACGTCTACTTCCTGCCCCGTCAGGTGGTCG
GGGAGGGGGAGCTGTTCGCCCTGACCGTGTCCGGCGACAGCATGATCGACGCGGCGATCTGCGACGGTGACATCGTGACC
GTCCGCAAGCAGGACACCGCCGAGCACGGCGATATCGTCGCCGCTCTCCTGGAGGACGAGGCCACCGTCAAGGTCCTGCA
CCGGCAGGACGGACAGGTGTGGCTGATGCCGCGCAACGCGTCCTTCGCCCCGATCCCCGGTGACGACGCGCGCATTCTCG
GCAAGGTGGTCGGCGTCCTGCGCGTGCTCTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.902

91.928

0.404