Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB16_RS26945 Genome accession   NZ_CP108008
Coordinates   5834717..5835391 (+) Length   224 a.a.
NCBI ID   WP_271320775.1    Uniprot ID   A0ABV9WP28
Organism   Streptomyces sp. NBC_00334     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5829717..5840391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS26925 (OHB16_26930) - 5830877..5831473 (+) 597 WP_271320772.1 DUF5998 family protein -
  OHB16_RS26930 (OHB16_26935) - 5831473..5832666 (+) 1194 WP_271320773.1 nucleotide pyrophosphatase/phosphodiesterase family protein -
  OHB16_RS26935 (OHB16_26940) - 5832709..5833359 (+) 651 WP_153177578.1 thymidine kinase -
  OHB16_RS26940 (OHB16_26945) - 5833473..5834717 (+) 1245 WP_328659638.1 sensor histidine kinase -
  OHB16_RS26945 (OHB16_26950) vraR 5834717..5835391 (+) 675 WP_271320775.1 response regulator transcription factor Regulator
  OHB16_RS26950 (OHB16_26955) - 5835562..5835993 (+) 432 WP_328659640.1 hypothetical protein -
  OHB16_RS26955 (OHB16_26960) - 5836017..5836784 (+) 768 WP_328659642.1 ABC transporter ATP-binding protein -
  OHB16_RS26960 (OHB16_26965) - 5836781..5839354 (+) 2574 WP_328659644.1 FtsX-like permease family protein -
  OHB16_RS26965 (OHB16_26970) - 5839385..5840188 (-) 804 WP_271320779.1 VOC family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23895.35 Da        Isoelectric Point: 4.6149

>NTDB_id=651380 OHB16_RS26945 WP_271320775.1 5834717..5835391(+) (vraR) [Streptomyces sp. NBC_00334]
MTQAGGPIRVAVVDDQPLIRAGFSMVLAGQDDIEVVGEAENGADALDLLHRVEADVVIMDIRMPVMDGIQATEQLMRREN
PPGVLVLTTFDNDEDAFAALRAGAGGFLLKNAPATEVVNAIRVLAAGESVVAPRITRLLLDRVSDRLAPTNGQAERLDSL
TARERDVLALVARGLSNAEIAADLYVAQATVKTHLGNLMAKLHLRDRAQAVAFAYESGLVRPSP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=651380 OHB16_RS26945 WP_271320775.1 5834717..5835391(+) (vraR) [Streptomyces sp. NBC_00334]
ATGACGCAGGCAGGCGGACCGATCCGGGTGGCCGTGGTGGACGACCAGCCGCTGATCCGGGCCGGGTTCTCGATGGTGCT
GGCGGGCCAGGACGACATCGAGGTCGTCGGTGAGGCGGAGAACGGGGCGGACGCGCTCGACCTGCTGCACAGGGTCGAGG
CGGACGTCGTCATCATGGACATCCGGATGCCCGTCATGGACGGCATCCAGGCCACCGAGCAGCTGATGCGGCGGGAGAAC
CCGCCGGGCGTGCTGGTGCTGACCACCTTCGACAACGACGAGGACGCGTTCGCGGCACTGCGCGCCGGGGCGGGCGGCTT
CCTGCTGAAGAACGCCCCGGCCACGGAGGTCGTGAACGCCATCCGCGTCCTGGCCGCCGGGGAGTCGGTGGTGGCGCCGC
GCATCACCCGGCTGCTCCTGGACCGGGTCTCGGACCGGCTGGCACCGACGAACGGCCAGGCCGAACGGCTGGACTCCCTC
ACCGCCCGCGAACGGGACGTACTCGCCCTGGTCGCCCGGGGGCTGTCCAACGCCGAGATCGCGGCCGACCTGTACGTCGC
GCAGGCCACGGTGAAGACGCACCTGGGCAACCTCATGGCGAAACTGCACCTGCGGGACCGCGCCCAGGCCGTCGCGTTCG
CCTACGAGTCCGGGCTGGTCCGGCCCTCCCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-121)

Bacterial regulatory proteins, luxR family (GerE)

(158-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.318

95.536

0.366