Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LGY76_RS00880 Genome accession   NZ_CP091452
Coordinates   178489..179643 (-) Length   384 a.a.
NCBI ID   WP_000755277.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB329     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 173489..184643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGY76_RS00860 - 174650..175300 (+) 651 WP_086225940.1 TetR/AcrR family transcriptional regulator -
  LGY76_RS00865 - 175406..176326 (+) 921 WP_000084546.1 DMT family transporter -
  LGY76_RS00870 - 176718..177287 (-) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  LGY76_RS00875 dprA 177338..178468 (-) 1131 WP_031945334.1 DNA-processing protein DprA Machinery gene
  LGY76_RS00880 tsaP 178489..179643 (-) 1155 WP_000755277.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LGY76_RS00885 def 179766..180296 (+) 531 WP_001196539.1 peptide deformylase -
  LGY76_RS00890 - 180333..180761 (+) 429 WP_000231986.1 DUF2946 family protein -
  LGY76_RS00895 - 180833..182947 (+) 2115 WP_001120685.1 TonB-dependent copper receptor -
  LGY76_RS00900 - 183001..183207 (+) 207 WP_000182542.1 hypothetical protein -
  LGY76_RS00905 - 183277..184491 (-) 1215 WP_001177954.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42355.34 Da        Isoelectric Point: 8.5816

>NTDB_id=651378 LGY76_RS00880 WP_000755277.1 178489..179643(-) (tsaP) [Acinetobacter baumannii strain AB329]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQLQVRVEALNNSVPVIPLEHIKQWLE
SSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMLEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=651378 LGY76_RS00880 WP_000755277.1 178489..179643(-) (tsaP) [Acinetobacter baumannii strain AB329]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCCCTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTTTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACTACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AGCAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGTGATCGTGTTATGCTTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACTAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAAGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.698

100

0.987