Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB16_RS26720 Genome accession   NZ_CP108008
Coordinates   5778595..5779374 (-) Length   259 a.a.
NCBI ID   WP_271320733.1    Uniprot ID   A0ABV9WRC3
Organism   Streptomyces sp. NBC_00334     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5773595..5784374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS26705 (OHB16_26710) - 5773600..5775486 (+) 1887 WP_271417003.1 IucA/IucC family protein -
  OHB16_RS26710 (OHB16_26715) - 5775600..5776292 (+) 693 WP_271320731.1 GNAT family N-acetyltransferase -
  OHB16_RS26715 (OHB16_26720) - 5776440..5778470 (+) 2031 WP_271320732.1 ATP-dependent DNA helicase -
  OHB16_RS26720 (OHB16_26725) dinR/lexA 5778595..5779374 (-) 780 WP_271320733.1 transcriptional repressor LexA Regulator
  OHB16_RS26725 (OHB16_26730) nrdR 5779961..5780509 (+) 549 WP_271320734.1 transcriptional regulator NrdR -
  OHB16_RS26730 (OHB16_26735) - 5780674..5783571 (+) 2898 WP_328659612.1 vitamin B12-dependent ribonucleotide reductase -
  OHB16_RS26735 (OHB16_26740) - 5783676..5784209 (-) 534 WP_328659614.1 TerD family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27898.61 Da        Isoelectric Point: 7.0665

>NTDB_id=651378 OHB16_RS26720 WP_271320733.1 5778595..5779374(-) (dinR/lexA) [Streptomyces sp. NBC_00334]
MTTTADSAAITAQDRPQGRPEPVHAMSDAANPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=651378 OHB16_RS26720 WP_271320733.1 5778595..5779374(-) (dinR/lexA) [Streptomyces sp. NBC_00334]
GTGACCACCACCGCCGACAGTGCCGCCATCACTGCCCAGGACCGCCCCCAGGGCCGACCTGAGCCGGTGCACGCGATGAG
CGACGCCGCGAATCCCGAGGGGCACAAGCGCTCCCTCCCGGGGCGACCTCCCGGCATCCGGGCGGACAGCTCGGGGCTCA
CCGACCGCCAGCGCCGGGTGATCGAGGTCATCCGCGACTCCGTGCAGCGGCGCGGATACCCGCCGTCGATGCGCGAGATC
GGTCAGGCCGTCGGCCTTTCCAGTACCTCCTCCGTCGCACACCAGTTGATGGCGCTGGAGCGCAAGGGCTTCCTGCGCCG
GGACCCGCACCGTCCCCGCGCCTACGAGGTGCGCGGCTCCGACCAGGCCGCCTCGGTGCAGCCCACGGACACCGCCGGAA
AGCCGGCCGCGTCGTACGTCCCGCTCGTCGGGCGCATCGCCGCCGGTGGGCCGATCCTCGCCGAGGAGTCCGTCGAGGAC
GTCTTCCCGCTCCCCCGGCAGTTGGTCGGCGACGGCGAGCTGTTCGTGCTGAAGGTCGTCGGCGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCCATGCTCG
ACGGCGAGGCCACCGTCAAGCGTTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACGCGGCGTACGAGCCG
ATCCCCGGTGACGACGCGACGATCCTCGGCAAGGTGGTGGCCGTACTGCGTCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375