Detailed information NTG0651341

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OHB16_RS14955
• Genome accession: NZ_CP108008
• Coordinates: 3269516..3270514 (-)
• Length: 332 a.a.
• NCBI ID: WP_271416441.1
• Uniprot ID: A0ABV9WVH6
• Organism: Streptomyces sp. NBC_00334
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3264516..3275514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHB16_RS14935 (OHB16_14945)	-	3264809..3265570 (-)	762	WP_271416437.1	DeoR/GlpR family DNA-binding transcription regulator	-
OHB16_RS14940 (OHB16_14950)	-	3265772..3267340 (-)	1569	WP_271416438.1	MFS transporter	-
OHB16_RS14945 (OHB16_14955)	-	3267404..3268375 (+)	972	WP_271416439.1	YafY family protein	-
OHB16_RS14950 (OHB16_14960)	-	3268386..3269069 (-)	684	WP_271416440.1	TetR family transcriptional regulator	-
OHB16_RS14955 (OHB16_14965)	rpoS	3269516..3270514 (-)	999	WP_271416441.1	sigma-70 family RNA polymerase sigma factor	Regulator
OHB16_RS14960 (OHB16_14970)	-	3270717..3271235 (+)	519	WP_328657834.1	N-acetyltransferase family protein	-
OHB16_RS14965 (OHB16_14975)	-	3271317..3272102 (-)	786	WP_328657836.1	class III extradiol ring-cleavage dioxygenase	-
OHB16_RS14970 (OHB16_14980)	-	3272198..3272689 (+)	492	WP_271416444.1	MarR family transcriptional regulator	-
OHB16_RS14975 (OHB16_14985)	-	3272799..3274343 (-)	1545	WP_328657839.1	MFS transporter	-
OHB16_RS14980 (OHB16_14990)	-	3274666..3275325 (-)	660	WP_271416446.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37062.72 Da
• Isoelectric Point: 4.9068

>NTDB_id=651341 OHB16_RS14955 WP_271416441.1 3269516..3270514(-) (rpoS) [Streptomyces sp. NBC_00334]
MATRAVARRKSATGETSGAATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGGEETAAD
ASREELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=651341 OHB16_RS14955 WP_271416441.1 3269516..3270514(-) (rpoS) [Streptomyces sp. NBC_00334]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCGCGGCAACCAGCGTCCGCGCCAACGG
CGGAGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTGGACGAGATCGCCCGGACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCCGGTGTGTTCGCGCGGCAGGTCCTCGAAGGCGGCGAGGAGACCGCGGCCGAC
GCCAGCCGCGAGGAGCTCCAGGCGCTGATCGACGAGAGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGTCT
GGTCGTCGCCGTCGCCCGCCGCTACCCGCGCAGCGGTCTGCCGCTCCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCGATCGCCGACCAGTCCCGCACCATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGAGCCGGAGCCCGCCGAGATCGCGGCGGAGCTGGGCTCGACGCCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCGGCCGTGTCCCCCGAGCAGTCGGTGCTGACCCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGCCTCGACCCGCGCACCGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACCGAGGTCGGCAAGGAGCACGGCCTCACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAG
AAGCTGGCCCGTGACACCGGCTTCGAGGCGGCGGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364