Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   OHB16_RS11160 Genome accession   NZ_CP108008
Coordinates   2408409..2410340 (+) Length   643 a.a.
NCBI ID   WP_271415768.1    Uniprot ID   A0ABV9X0U3
Organism   Streptomyces sp. NBC_00334     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2403409..2415340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS11125 (OHB16_11135) - 2403427..2403951 (+) 525 WP_271415764.1 hypothetical protein -
  OHB16_RS11145 (OHB16_11155) - 2404677..2404982 (+) 306 WP_328657306.1 YtxH domain-containing protein -
  OHB16_RS11150 (OHB16_11160) - 2405068..2406522 (+) 1455 WP_328657308.1 FGGY family carbohydrate kinase -
  OHB16_RS11155 (OHB16_11165) rcrP 2406676..2408409 (+) 1734 WP_271415767.1 ABC transporter ATP-binding protein Regulator
  OHB16_RS11160 (OHB16_11170) rcrQ 2408409..2410340 (+) 1932 WP_271415768.1 ABC transporter ATP-binding protein Regulator
  OHB16_RS11165 (OHB16_11175) - 2410390..2411621 (-) 1232 Protein_2211 RNA polymerase sigma factor -
  OHB16_RS11170 (OHB16_11180) dnaG 2411703..2413628 (-) 1926 WP_271415769.1 DNA primase -
  OHB16_RS11175 (OHB16_11185) - 2413699..2414964 (-) 1266 WP_271415770.1 FAD-dependent oxidoreductase -

Sequence


Protein


Download         Length: 643 a.a.        Molecular weight: 69778.04 Da        Isoelectric Point: 5.4386

>NTDB_id=651332 OHB16_RS11160 WP_271415768.1 2408409..2410340(+) (rcrQ) [Streptomyces sp. NBC_00334]
MAGPAGRMMAGAGRPDQRSMDFKGSSKRLVAQFRPERATLFTLLACVVVSVGLNVVGPKILGRATDLVFAGIVGRDMPSG
ATKEQVLDSMRERGDGNVADMLRSTDFTPGRGIDFGAVGEVLLLALATFAVAGLLMAVATRLVNRAVNRTMFRLREDVQT
KLSRLPLSYFDTRQRGEVLSRATNDIDNIQQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVG
KRSQPQFVQQWRSTGQLNAHIEEMYTGHALVKVFGRQEESAKQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLV
AVVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGARPEDLRGRVEL
EHVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRIALDGVDIAKMSRDELRAGIGMVLQD
TWLFGGTIAENIAYGASREVTRGEIEEAARAAHVDRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHSELLAADGAYARLYQAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=651332 OHB16_RS11160 WP_271415768.1 2408409..2410340(+) (rcrQ) [Streptomyces sp. NBC_00334]
ATGGCCGGGCCTGCGGGTCGCATGATGGCCGGGGCGGGCCGCCCCGACCAGCGTTCCATGGACTTCAAGGGGTCGAGCAA
ACGGCTCGTCGCCCAGTTCCGGCCGGAACGGGCCACGCTGTTCACGCTGCTGGCGTGCGTGGTGGTCAGCGTCGGCCTCA
ACGTGGTCGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGC
GCCACGAAGGAGCAGGTCCTGGACTCCATGCGGGAGCGCGGTGACGGCAACGTCGCCGACATGCTCCGCAGCACGGACTT
CACGCCGGGCCGGGGCATCGACTTCGGTGCGGTCGGCGAGGTGCTGCTCCTCGCGCTGGCGACGTTCGCGGTGGCCGGGC
TGCTGATGGCGGTGGCCACCCGGCTGGTGAACCGGGCGGTGAACCGGACGATGTTCCGGCTGCGCGAGGACGTGCAGACG
AAGCTGTCCCGGCTGCCGCTGTCGTACTTCGACACCCGCCAGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGA
CAACATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGA
TGTTCTACGTGTCCTGGATCCTGGCGCTGGTAGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTGGCGACGCGGGTGGGC
AAGCGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCCACGGGGCAGCTGAACGCGCACATCGAGGAGATGTACACCGG
GCACGCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGG
CCGGGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTGGTC
GCGGTGGTCGGCGGTCTGCGGGTCGCCTCGGGCACGCTGTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGGCA
GTTCTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGATCTTCG
AGCTGCTCGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGCGCCCGGCCGGAGGACCTGCGCGGGCGGGTGGAGCTG
GAGCACGTCTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAGCCCGGCCACACGGT
CGCCATCGTCGGCCCGACGGGGGCCGGCAAGACGACCCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGTCCGGCGGGC
GGATCGCCCTGGACGGCGTCGACATAGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGCATCGGCATGGTGCTCCAGGAC
ACCTGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCGCGGGAGGTCACCCGCGGGGAGATCGAGGA
GGCCGCGCGGGCCGCGCACGTCGACCGGTTCGTGCGGACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCA
CGGGGGTGAGCGCGGGCGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGAC
GAGGCGACGTCGTCCGTGGACACGCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTC
GTTCGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTGGTGATGGAGAACGGGTCGATCGTCGAGC
AGGGGGCGCACTCCGAGCTGCTCGCGGCCGACGGCGCGTACGCCCGGCTGTACCAGGCGCAGTTCGCGCAGGCCGTGGCC
GAGGTGGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.734

96.89

0.404