Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB16_RS11155 Genome accession   NZ_CP108008
Coordinates   2406676..2408409 (+) Length   577 a.a.
NCBI ID   WP_271415767.1    Uniprot ID   A0ABV9WXL8
Organism   Streptomyces sp. NBC_00334     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2401676..2413409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS11120 (OHB16_11130) - 2402793..2403245 (-) 453 WP_271415763.1 hypothetical protein -
  OHB16_RS11125 (OHB16_11135) - 2403427..2403951 (+) 525 WP_271415764.1 hypothetical protein -
  OHB16_RS11145 (OHB16_11155) - 2404677..2404982 (+) 306 WP_328657306.1 YtxH domain-containing protein -
  OHB16_RS11150 (OHB16_11160) - 2405068..2406522 (+) 1455 WP_328657308.1 FGGY family carbohydrate kinase -
  OHB16_RS11155 (OHB16_11165) rcrP 2406676..2408409 (+) 1734 WP_271415767.1 ABC transporter ATP-binding protein Regulator
  OHB16_RS11160 (OHB16_11170) rcrQ 2408409..2410340 (+) 1932 WP_271415768.1 ABC transporter ATP-binding protein Regulator
  OHB16_RS11165 (OHB16_11175) - 2410390..2411621 (-) 1232 Protein_2211 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62393.68 Da        Isoelectric Point: 6.0302

>NTDB_id=651331 OHB16_RS11155 WP_271415767.1 2406676..2408409(+) (rcrP) [Streptomyces sp. NBC_00334]
MLIRLLRTCLRPYKKPIALLVALQFLQTCASLYLPTLNADIIDDGVVKGDSGYILSYGALMIGISLAQVVCNIGAVFYGA
RTAAALGRDVRGAVFDRVQSFSAREVGDFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVMALGLDVPLSGV
LVGVVPVLAVCVTLIVRKLRPLFRAMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANADLTEVALGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVAPVTRLRRHGHLEIRGAGFRYPGAEEPVLRNIELVAKPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVNGVDVR
TVAPKTLAEVVSLVPQKPYLFAGTVATNLRYGNPAATDEELWHALEVAQAKEFVAELEGGLDAPIAQGGTNVSGGQRQRI
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIIVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=651331 OHB16_RS11155 WP_271415767.1 2406676..2408409(+) (rcrP) [Streptomyces sp. NBC_00334]
GTGCTCATACGACTCCTGCGGACCTGTCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGGCGCTGCAGTTCCTGCA
GACCTGCGCCTCCCTGTACCTGCCGACCCTGAACGCGGACATCATCGACGACGGTGTCGTGAAGGGTGACTCGGGCTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTGGTGTGCAACATCGGCGCGGTCTTCTACGGCGCG
CGCACGGCCGCCGCCCTCGGCCGGGACGTACGGGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTGGG
CGACTTCGGCGCCCCCTCGCTGATCACCCGGACGACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTCGTCGGGGTGGTGCCGGTGCTGGCGGTCTGCGTCACGCTGATCGTGCGGAAGCTGCGCCCGCTGTTCCGGGCCATGCA
GGTGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGCTTCAGGAAGGCCAACGCCGACCTCACCGAGGTGGCGCTGGGCACCGGCAACCTGCTGGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACGGCGTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGAGCAGTGTGGTGCCG
CCGGTGGCACCGGTCACCCGGTTGCGCCGGCACGGGCATCTGGAGATCCGGGGCGCGGGCTTCCGCTATCCCGGCGCGGA
GGAGCCGGTGCTGCGCAACATCGAGCTGGTGGCCAAGCCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACCCTGCTGGGCCTGGTCCCCCGGCTCTTCGACGCCACCGACGGGGAGGTCCTGGTCAACGGGGTGGACGTGCGG
ACCGTGGCCCCGAAGACGCTGGCCGAGGTGGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACCGTCGCGAC
GAATCTGCGCTACGGCAATCCGGCCGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCGCCGAGCTGGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGCACGAACGTGTCGGGCGGTCAGCGCCAGCGGATC
GCCATCGCCCGGACGCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCCGCGCTGGGCCGGGAGACGGCCGAGGCGACCGTGGTGATCGTCGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCATCGTGCTGGACGAGGGGCGGGTGGTCGGTGTGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.668

93.934

0.373