Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHB16_RS04870 Genome accession   NZ_CP108008
Coordinates   1068014..1069039 (+) Length   341 a.a.
NCBI ID   WP_328656376.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00334     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1063014..1074039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS04865 (OHB16_04875) - 1065860..1067989 (+) 2130 WP_328656373.1 hypothetical protein -
  OHB16_RS04870 (OHB16_04880) cytR 1068014..1069039 (+) 1026 WP_328656376.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB16_RS04875 (OHB16_04885) - 1069340..1070485 (+) 1146 WP_328656378.1 cellulose binding domain-containing protein -
  OHB16_RS04880 (OHB16_04890) - 1070699..1071796 (+) 1098 WP_271414679.1 lytic polysaccharide monooxygenase -
  OHB16_RS04885 (OHB16_04895) - 1071912..1072310 (+) 399 WP_271414680.1 luciferase family protein -
  OHB16_RS04890 (OHB16_04900) - 1072411..1074036 (-) 1626 WP_328656381.1 MFS transporter -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36820.96 Da        Isoelectric Point: 6.3672

>NTDB_id=651318 OHB16_RS04870 WP_328656376.1 1068014..1069039(+) (cytR) [Streptomyces sp. NBC_00334]
MGRQRPGAPTLEEVAALAGVGRGTVSRVVNNAAGVRDSTRRAVQRAIAELGYVPNLAARSLAGHRADAVALVMTEPDWRL
FGEPFFTEIVHAVGDALTDTPVQLLLTLVRTDTERRRFVEYARGGRVDGVLLMSVHAEDPLPDMLAKAGLPTVMLGRRSA
DENITYVDADNAGGARRAVTYLLDGGRRRIGVISGPLDMYVAQCRLRGYREALELAGVTAGASLVVEGGDFKEESGRRAM
TELIARHPDLDAVFAASDTLAAGALGALRTAGRRVPQDVAVSGFDDFQPARPTDPPLTTVRQPLEEIGRTMVRLLQEEME
DSPVAWRHVILRTELVLRNSA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=651318 OHB16_RS04870 WP_328656376.1 1068014..1069039(+) (cytR) [Streptomyces sp. NBC_00334]
ATGGGCAGGCAGCGTCCCGGTGCGCCGACGCTGGAGGAGGTGGCCGCGCTCGCCGGCGTCGGGCGGGGCACCGTCTCGAG
GGTCGTCAACAACGCGGCCGGGGTACGCGATTCGACGCGTCGCGCCGTGCAGCGGGCCATCGCCGAGCTCGGCTATGTTC
CGAATCTCGCGGCCCGTTCCCTGGCGGGGCATCGTGCGGACGCCGTCGCTCTGGTGATGACGGAGCCGGACTGGCGGCTG
TTCGGGGAGCCCTTCTTCACCGAGATCGTCCACGCCGTCGGTGACGCCCTGACCGACACCCCGGTGCAGTTGCTGCTCAC
GCTGGTCCGTACGGACACCGAGCGCCGGCGCTTCGTGGAGTACGCCCGTGGCGGCAGGGTCGACGGTGTGCTGCTGATGT
CCGTGCACGCCGAGGACCCGCTGCCGGACATGCTCGCGAAGGCGGGGCTGCCCACCGTCATGCTGGGGCGGCGTTCCGCG
GACGAGAACATCACCTACGTCGACGCCGACAACGCGGGCGGTGCGCGCAGAGCGGTGACGTATCTGCTGGACGGCGGCCG
CAGGAGGATCGGGGTCATCAGCGGGCCGCTGGACATGTACGTCGCCCAGTGCCGGTTGCGCGGGTACCGGGAGGCGCTGG
AGCTGGCGGGCGTGACCGCCGGGGCGTCGCTGGTCGTCGAGGGCGGCGACTTCAAGGAGGAGAGCGGGCGTCGGGCGATG
ACCGAACTGATCGCCCGTCACCCGGACCTCGACGCGGTCTTCGCCGCCTCGGACACCCTGGCCGCCGGGGCGCTCGGCGC
ACTGCGCACCGCAGGGCGGCGGGTTCCGCAGGACGTCGCGGTGAGCGGCTTCGACGACTTCCAGCCGGCCCGGCCCACGG
ACCCCCCGCTGACGACGGTGCGCCAGCCGCTGGAGGAGATCGGCCGCACGATGGTCCGACTGCTGCAGGAGGAGATGGAG
GACTCCCCCGTCGCCTGGCGGCACGTCATCCTGCGTACGGAACTGGTCCTTCGGAACTCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(10-55)

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.716

98.24

0.361