Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHB16_RS04315 Genome accession   NZ_CP108008
Coordinates   945252..946274 (+) Length   340 a.a.
NCBI ID   WP_328656303.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00334     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 940252..951274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS04300 (OHB16_04305) - 941760..942653 (-) 894 WP_328656299.1 carbohydrate ABC transporter permease -
  OHB16_RS04305 (OHB16_04310) - 942656..943591 (-) 936 WP_271414577.1 sugar ABC transporter permease -
  OHB16_RS04310 (OHB16_04315) - 943588..944949 (-) 1362 WP_328656301.1 extracellular solute-binding protein -
  OHB16_RS04315 (OHB16_04320) cytR 945252..946274 (+) 1023 WP_328656303.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB16_RS04320 (OHB16_04325) - 946428..947600 (+) 1173 WP_328656307.1 MFS transporter -
  OHB16_RS04325 (OHB16_04330) - 947682..948425 (+) 744 WP_328656309.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OHB16_RS04330 (OHB16_04335) - 948412..948849 (-) 438 WP_328656311.1 MarR family transcriptional regulator -
  OHB16_RS04335 (OHB16_04340) - 948934..949218 (+) 285 WP_271414583.1 DUF6332 family protein -
  OHB16_RS04340 (OHB16_04345) - 949179..949844 (-) 666 WP_271414584.1 response regulator transcription factor -
  OHB16_RS04345 (OHB16_04350) - 949892..951157 (-) 1266 WP_328656315.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36575.67 Da        Isoelectric Point: 7.2804

>NTDB_id=651316 OHB16_RS04315 WP_328656303.1 945252..946274(+) (cytR) [Streptomyces sp. NBC_00334]
MAGSTLRDVARRAGVSIRTVSNVVNGSVPVSDELRVRVQAALDELDYRPNLVARNLRRGRSGMIALVVPELDVPYFAELA
REVITAARTHGYVVMLDQTDGDGERERELLGRESRATMFDGLLLSPLSISADELRRRTNRVPVVLLGEHIFNGSLHHVAI
DNVVAAREATEHLLGLGRRRIAAIGDQPYSTGETAQLRTTGYRQALERAGLTADEGLIVPTPRFHRHLGARAMEHLLALP
EPPDAVFCYNDLLAIGAMHTLTRAGVRVPDDIAVVGVDGIQEGRYSSPSLTTVAPDKAAIARTAVSTLLGVIDGSAPAPR
ETKAPHRLLVRESTGGAPAG

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=651316 OHB16_RS04315 WP_328656303.1 945252..946274(+) (cytR) [Streptomyces sp. NBC_00334]
ATGGCCGGCTCCACGCTCCGCGACGTCGCCCGACGTGCCGGAGTCTCGATCCGCACCGTGTCCAACGTGGTCAACGGCTC
GGTGCCCGTCTCCGACGAGTTGCGGGTCCGGGTGCAGGCCGCGCTCGACGAACTCGACTACCGGCCCAACCTGGTGGCCC
GCAATCTCCGCCGGGGCCGCAGCGGCATGATCGCGCTGGTCGTCCCCGAACTGGACGTGCCGTACTTCGCCGAACTGGCC
CGCGAGGTGATCACCGCCGCCCGCACCCACGGGTACGTGGTGATGCTCGACCAGACCGACGGCGACGGTGAGCGGGAGCG
GGAGCTGCTGGGGCGCGAGTCCCGTGCCACCATGTTCGACGGCCTGCTGCTGAGCCCCCTGTCCATCTCCGCGGACGAGT
TGCGCAGGCGCACCAACCGGGTGCCGGTCGTCCTGCTCGGCGAGCACATCTTCAACGGCAGCCTCCACCACGTGGCGATC
GACAACGTCGTCGCGGCCCGGGAGGCGACGGAGCACCTGCTCGGCCTCGGCCGTCGGCGCATCGCCGCCATCGGCGACCA
GCCCTACAGCACCGGCGAGACCGCCCAGCTGCGCACGACCGGGTACCGCCAGGCGCTGGAGCGGGCCGGGCTCACCGCCG
ATGAAGGGCTGATCGTCCCCACCCCGCGTTTCCACCGCCACCTGGGCGCCCGGGCCATGGAGCACCTGCTCGCGCTGCCG
GAGCCGCCCGACGCCGTCTTCTGCTACAACGACCTGCTGGCCATCGGCGCCATGCACACCCTGACCCGGGCCGGCGTGCG
GGTGCCCGACGACATCGCCGTCGTCGGGGTGGACGGCATCCAGGAGGGGCGGTACAGCTCGCCGTCGCTGACCACCGTCG
CCCCGGACAAGGCCGCGATCGCGCGCACCGCGGTCAGCACCCTGCTCGGTGTGATCGACGGTTCGGCGCCCGCACCGAGG
GAGACCAAGGCGCCGCACCGGCTGCTCGTGCGGGAGAGCACAGGAGGGGCACCGGCCGGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-334)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.938

99.706

0.388
  cytR Vibrio parahaemolyticus RIMD 2210633

39.683

92.647

0.368