Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB16_RS03725 Genome accession   NZ_CP108008
Coordinates   817214..817870 (+) Length   218 a.a.
NCBI ID   WP_328656195.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00334     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 812214..822870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS03710 (OHB16_03715) - 814326..814952 (+) 627 WP_271414469.1 histidine phosphatase family protein -
  OHB16_RS03715 (OHB16_03720) - 814981..815763 (-) 783 WP_271414470.1 class I SAM-dependent methyltransferase -
  OHB16_RS03720 (OHB16_03725) - 816027..817217 (+) 1191 WP_328661299.1 sensor histidine kinase -
  OHB16_RS03725 (OHB16_03730) vraR 817214..817870 (+) 657 WP_328656195.1 response regulator transcription factor Regulator
  OHB16_RS03730 (OHB16_03735) - 817949..819238 (-) 1290 WP_328656196.1 alkyl sulfatase dimerization domain-containing protein -
  OHB16_RS03735 (OHB16_03740) - 819349..819978 (+) 630 WP_271414473.1 TetR/AcrR family transcriptional regulator -
  OHB16_RS03740 (OHB16_03745) - 820501..821499 (+) 999 WP_328656198.1 aldo/keto reductase -
  OHB16_RS03745 (OHB16_03750) - 821554..822414 (+) 861 WP_271414475.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 22668.10 Da        Isoelectric Point: 10.2706

>NTDB_id=651314 OHB16_RS03725 WP_328656195.1 817214..817870(+) (vraR) [Streptomyces sp. NBC_00334]
MNPTTPAVRVLLCDDHAVVRAGLRALLSSTEGIEVVGEADSGEDALAMVAGLRPDVVLMDLQLGRGMDGVATTRRLTSAG
DASGSGPAPRVLVLTMFDTDADIARAVAAGATGYLLKAERPERLFAAIRDAAAGRTVLSGSVADRVVSRLQAPGPALTAR
ERDVLALLGQGLGNREIARSLFLSEATVKTHLGRVYAKLGVRTRTAAVAAATRHRLLP

Nucleotide


Download         Length: 657 bp        

>NTDB_id=651314 OHB16_RS03725 WP_328656195.1 817214..817870(+) (vraR) [Streptomyces sp. NBC_00334]
GTGAACCCGACCACCCCCGCCGTCCGGGTGCTGCTCTGCGACGACCACGCCGTCGTCCGGGCCGGCCTGCGCGCGCTGCT
GTCCAGCACCGAGGGCATCGAGGTCGTCGGCGAGGCCGACAGCGGTGAGGACGCTCTCGCCATGGTCGCGGGCCTGCGTC
CGGACGTGGTGCTCATGGATCTGCAACTGGGCAGGGGGATGGACGGCGTCGCCACCACCCGCCGGCTGACCTCCGCCGGC
GACGCGTCCGGGTCCGGCCCCGCGCCGCGGGTGCTGGTCCTCACCATGTTCGACACCGATGCCGACATCGCCCGCGCGGT
CGCCGCGGGCGCGACCGGCTACCTCCTCAAGGCCGAGCGGCCGGAACGGCTGTTCGCGGCGATCCGCGATGCCGCGGCCG
GCCGCACCGTGCTGTCGGGCTCGGTCGCCGACCGGGTCGTCTCCCGTCTGCAGGCCCCCGGGCCCGCACTCACCGCCCGT
GAACGCGACGTTCTCGCCCTGCTCGGCCAGGGCCTCGGCAACCGCGAGATCGCCCGGTCGCTGTTCCTGAGCGAGGCCAC
GGTCAAGACCCACCTCGGCCGTGTCTACGCCAAGCTCGGCGTCCGCACCCGGACAGCGGCGGTCGCCGCCGCGACCCGCC
ACCGTCTACTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(10-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.916

98.165

0.362