Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA37_RS36680 Genome accession   NZ_CP108006
Coordinates   8118818..8119810 (+) Length   330 a.a.
NCBI ID   WP_266912027.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8113818..8124810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS36665 (OHA37_36695) - 8114720..8115289 (-) 570 WP_266912021.1 DUF305 domain-containing protein -
  OHA37_RS36670 (OHA37_36700) - 8115265..8116635 (-) 1371 WP_266912023.1 DUF1996 domain-containing protein -
  OHA37_RS36675 (OHA37_36705) - 8116729..8118444 (-) 1716 WP_266912025.1 discoidin domain-containing protein -
  OHA37_RS36680 (OHA37_36710) cytR 8118818..8119810 (+) 993 WP_266912027.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA37_RS36685 (OHA37_36715) - 8119823..8120662 (-) 840 WP_266912029.1 PaaX family transcriptional regulator C-terminal domain-containing protein -
  OHA37_RS36690 (OHA37_36720) - 8120726..8121469 (-) 744 WP_266913404.1 Asp/Glu racemase -
  OHA37_RS36695 (OHA37_36725) - 8121576..8122490 (-) 915 WP_266912031.1 fumarylacetoacetate hydrolase family protein -
  OHA37_RS36700 (OHA37_36730) - 8122616..8123728 (-) 1113 WP_266912033.1 cupin domain-containing protein -
  OHA37_RS36705 (OHA37_36735) - 8123725..8124747 (-) 1023 WP_266912035.1 carbon-nitrogen hydrolase family protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35125.23 Da        Isoelectric Point: 6.7427

>NTDB_id=651297 OHA37_RS36680 WP_266912027.1 8118818..8119810(+) (cytR) [Streptomyces sp. NBC_00335]
MKRPTLEVVAARAGVSRSSVSRVVNGEATVAPEIREVVLRAVRELGYVPNAAARNLVTRRTQAVAVVVSDPPQGVVSDDP
LFSTVVRAVSRELEAAGKQVVLMLAESDRSRARVEEYVAGGHVDGVMLVALHGTDPLPAALARTGLPVASFNRTCAPEVP
YVELDNAAGAALAVRHLLARGRRRIATITGPLDLFESRERLDGYRAALRDTGRRSIVALGDFTRASGAEAMRQLLEDDPE
LDAVFAANDLMAIGALRTLRQVGLRVPEDVAVVGFDDIEAAAYTVPALTSVRSPMADQATATVRLLLGLIEGGSRDRVVM
PNALVVRESS

Nucleotide


Download         Length: 993 bp        

>NTDB_id=651297 OHA37_RS36680 WP_266912027.1 8118818..8119810(+) (cytR) [Streptomyces sp. NBC_00335]
ATGAAAAGACCCACGCTGGAAGTGGTCGCCGCCCGCGCGGGCGTGTCCCGATCGAGCGTCTCCCGTGTCGTCAACGGGGA
GGCCACGGTCGCACCCGAGATCCGCGAGGTCGTCCTGCGGGCCGTGCGCGAACTGGGCTACGTGCCCAACGCCGCCGCCC
GCAACCTGGTCACCCGCCGGACCCAGGCGGTCGCCGTGGTCGTCTCCGACCCGCCCCAGGGCGTGGTCTCCGACGACCCC
CTCTTCTCCACCGTGGTCCGCGCCGTCAGCAGGGAACTGGAGGCCGCCGGAAAACAGGTCGTGCTCATGCTCGCCGAATC
CGACCGGAGCCGGGCCCGGGTCGAGGAGTACGTGGCCGGCGGACACGTGGACGGCGTCATGCTCGTCGCCCTGCACGGCA
CGGACCCGCTGCCCGCGGCCCTGGCCAGGACGGGCCTGCCGGTCGCCTCGTTCAACCGCACCTGCGCCCCCGAGGTGCCG
TACGTGGAGCTGGACAACGCGGCCGGCGCCGCGCTGGCCGTACGCCACCTCCTGGCACGGGGTCGGCGCCGGATCGCCAC
CATCACCGGACCGCTGGACCTCTTCGAGTCCCGCGAGCGCCTCGACGGCTACCGCGCCGCCCTGCGCGACACCGGCCGCC
GGTCCATCGTGGCGCTGGGCGATTTCACCCGGGCCTCCGGAGCCGAGGCCATGCGGCAGCTGCTGGAGGACGACCCGGAA
CTGGACGCGGTGTTCGCGGCCAACGACCTGATGGCGATCGGCGCCCTGCGCACCCTGCGGCAGGTGGGCCTGCGGGTCCC
CGAGGACGTGGCCGTCGTCGGCTTCGACGACATCGAGGCCGCCGCGTACACCGTCCCGGCCCTCACCTCCGTACGCAGCC
CCATGGCCGACCAGGCCACGGCCACGGTCCGGCTGCTCCTGGGCCTGATCGAGGGAGGCTCCAGGGACCGGGTGGTCATG
CCGAACGCCCTCGTGGTCCGCGAATCCTCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.965

100

0.373
  cytR Vibrio parahaemolyticus RIMD 2210633

34.593

100

0.361