Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBPC_RS00475 Genome accession   NZ_AP012330
Coordinates   123305..125056 (+) Length   583 a.a.
NCBI ID   WP_004223038.1    Uniprot ID   -
Organism   Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 strain JCM 1200     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 118305..130056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBPC_RS00450 (BBPC_0089) - 118985..119899 (-) 915 WP_003833695.1 thiazole synthase -
  BBPC_RS00455 (BBPC_0090) thiF 119983..120696 (-) 714 WP_004223027.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BBPC_RS00460 (BBPC_0091) thiS 120824..121018 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  BBPC_RS00465 (BBPC_0092) - 121421..122494 (+) 1074 WP_193345784.1 aldo/keto reductase -
  BBPC_RS00470 (BBPC_0093) - 122706..123197 (+) 492 WP_004223035.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBPC_RS00475 (BBPC_0094) rcrP 123305..125056 (+) 1752 WP_004223038.1 ABC transporter ATP-binding protein Regulator
  BBPC_RS00480 (BBPC_0095) rcrQ 125071..126915 (+) 1845 WP_033524176.1 ABC transporter ATP-binding protein Regulator
  BBPC_RS00485 (BBPC_0096) - 126976..128037 (-) 1062 WP_004223043.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64380.47 Da        Isoelectric Point: 5.0959

>NTDB_id=65129 BBPC_RS00475 WP_004223038.1 123305..125056(+) (rcrP) [Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 strain JCM 1200]
MLRIVRYLSKAEIVQMLIALVSIVGQIWFDLTLPDYMADITQLVETPGSEMSDIWIAGGKMLLVSLGSVACAVVTGFIAA
RVGASFSQRLRSLEFKKVESFGPAEMNRFSTASLITRSTNDITQIQMFVTMGLMMLIKAPIMAVWAVCKIANKGLEWTFA
TGVAVAVLLAVIGVIMSFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEEYQEDKFTEANKELTETQLFTNRSMAI
MMPLMNTVMNGLMLAVYWIGAYLIDAAEALDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTD
PMVADGVKTAGKPGMEGEIEFRNVSFAYPDSRQAMLEGVNFTAKKGETVAFIGSTGSGKSSLVNLVPRFYDATQGEVLVD
GVDVRDYTLKALRDKIGYVPQQSFLFKGTIASNVAYGDTERNDADVKTACDVAQATEFIDKKDKKYDSGIAQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEREAKNSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHHE
LLDNCEVYRQIAESQLSEDELNR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=65129 BBPC_RS00475 WP_004223038.1 123305..125056(+) (rcrP) [Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 strain JCM 1200]
ATGCTTCGCATTGTGCGATACCTCTCCAAAGCGGAGATAGTCCAGATGCTCATTGCACTGGTCAGCATCGTCGGTCAGAT
CTGGTTCGATCTGACGCTACCGGATTACATGGCCGACATCACGCAGCTCGTGGAAACGCCGGGCAGTGAAATGAGTGATA
TCTGGATAGCGGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCGGTGGCGTGCGCGGTCGTCACCGGCTTCATCGCCGCG
CGCGTCGGCGCGTCGTTCAGCCAACGTCTGCGTTCGCTCGAATTCAAGAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCATCGCTCATCACCCGCTCCACGAACGACATCACGCAGATACAGATGTTCGTGACTATGGGTCTGA
TGATGCTGATCAAAGCGCCGATCATGGCCGTGTGGGCCGTATGCAAAATCGCGAACAAAGGCCTTGAATGGACGTTCGCC
ACTGGCGTCGCAGTAGCCGTGCTGCTGGCGGTGATCGGCGTGATCATGAGTTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAATATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCATACAACGCCGAGG
AGTACCAGGAAGACAAGTTCACCGAGGCCAACAAGGAACTCACCGAGACCCAGCTGTTCACCAACCGCTCCATGGCCATC
ATGATGCCGTTGATGAACACCGTCATGAACGGTCTGATGCTGGCCGTCTACTGGATCGGCGCCTACCTCATCGACGCCGC
CGAAGCGCTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTGATTATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCACGCGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAT
CCGATGGTCGCCGACGGTGTGAAGACCGCCGGCAAGCCTGGCATGGAAGGCGAAATCGAATTCCGCAACGTGAGCTTCGC
CTACCCCGATTCGCGTCAAGCTATGTTGGAAGGCGTCAATTTCACAGCCAAGAAGGGCGAAACGGTCGCATTCATCGGCT
CGACCGGCTCCGGAAAATCGTCTCTCGTCAACCTCGTGCCGCGCTTTTATGACGCGACGCAAGGCGAGGTTCTCGTCGAC
GGCGTTGACGTGCGCGACTACACGCTCAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
AGGCACGATTGCCAGCAATGTCGCGTACGGAGATACGGAACGCAACGACGCCGACGTGAAGACGGCATGCGATGTCGCGC
AGGCCACGGAATTCATCGACAAGAAGGACAAGAAATACGATTCCGGCATTGCGCAGGGTGGTTCCAACGTGTCGGGCGGG
CAGAAACAGCGCCTGTCGATTGCACGCGCCGTTTACCGTCATCCGGAAATCCTGATTTTCGACGACTCCTTCTCTGCGCT
TGATTTCAAGACCGATCGCGCCGTACGCGACGCGCTCGAACGGGAAGCGAAGAATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATTATGAACGCCGACCGCATCATCGTGCTCGACGATGGCAAAGTCGTTGGCCAAGGTACGCACCACGAA
CTGCTCGACAACTGCGAAGTATATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAGTTGAATCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.336

100

0.515

Multiple sequence alignment